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BioLiP
>protein
NIPGAILHSLAELQDGLNAMIDPSWRAVRSLDNWALAITMESTELLDSYPWKWWKNLNATPDLANVRIELVDIFHFSLSG
AMQMRSTPDDEIPAASLKPLKEVMTTFLPAKECTSDPYGFVFFPLTDTQNAIASFRNIIQLANAYRFDVIIECIIYAAED
LGFNLVAYYIAKHTLNCIRQLSGYKDGSYVKVNNGVEDNSLLHNCIKDVSLDEVLDADKYVQAWNSIMANVYEAFQIKES
DRKDAERWFALAKENRLA

The query sequence (length=258) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2yb0:E 264 257 0.9961 0.9735 1.0000 0.0 2cje:A, 2yay:A, 2yaz:A, 2yaz:B, 2yaz:D, 2yaz:E, 2yb0:A, 2yb0:B, 2yb0:D
2 4dl8:A 224 244 0.5078 0.5848 0.5369 4.93e-90 4dk4:A, 4dk4:B, 4dkb:A, 4dlc:A
3 1w2y:A 226 209 0.2791 0.3186 0.3445 1.56e-23 2cic:A, 1w2y:B
4 1q2v:A 518 82 0.0814 0.0405 0.2561 0.20 1q2v:B, 1q2v:C, 1q2v:D, 1q3q:A, 1q3q:B, 1q3q:C, 1q3q:D, 1q3r:A, 1q3s:A, 1q3s:B, 1q3s:C, 1q3s:D, 1q3s:E, 1q3s:F, 1q3s:G, 1q3s:H
5 4eez:B 342 80 0.0698 0.0526 0.2250 3.4 4eex:A, 4eex:B, 4eez:A
6 3vp5:A 185 50 0.0620 0.0865 0.3200 7.8 3vok:A
7 5u8t:6 661 52 0.0736 0.0287 0.3654 8.6 6wgi:6
8 8q0m:H 318 48 0.0543 0.0440 0.2917 8.6 8q1u:H, 8q25:H, 8q45:H, 8q47:H, 8q48:H, 8q4a:H, 7qsk:H, 7r45:H, 7r46:H, 7r47:H, 7r48:H, 7r4c:H, 7r4g:H, 7zd6:H, 6zka:H, 6zkc:H, 6zkd:H, 6zke:H, 6zkf:H, 6zkh:H, 6zki:H, 6zkj:H, 6zkl:H, 6zkm:H, 6zkn:H
9 6khn:A 490 87 0.0891 0.0469 0.2644 8.6 6khn:B, 6kho:A, 6kho:B, 6khp:A, 6khp:B
10 8ahc:B 114 29 0.0426 0.0965 0.3793 9.8 8a7i:A, 8a7i:B, 8ahc:A, 6bqa:A, 5e9v:A, 5e9v:B, 5eu1:A, 5eu1:B, 5f1h:A, 5f1h:B, 5f1l:A, 5f1l:B, 5f25:A, 5f25:B, 5f2p:A, 5f2p:B, 6hm0:A, 6hm0:B, 5i40:A, 5i7x:A, 5i7y:A, 5igm:A, 5igm:B, 5ign:A, 5ign:B, 5ji8:A, 5mky:A, 4nqn:A, 5twx:A, 5twx:B, 5twx:D, 5twx:C, 4uit:A, 4uiu:A, 4uiv:A, 4uiw:A, 6v0s:A, 6v0s:B, 6v0x:A, 6v14:A, 6v1b:A, 6v1b:B, 4xy8:A, 6y7h:A, 6y7h:B, 6y7i:A, 6y7i:B, 6y7j:A, 6y7j:B, 6y7k:A, 6y7l:A, 6yqr:AAA, 6yqs:AAA, 6yqw:A, 4yy6:A, 4yyd:A, 4yyg:A, 4yyh:A, 4yyh:B, 4yyi:A, 4yyi:B, 4yyi:D, 4yyi:E, 4yyj:A, 4yyj:B, 4yyj:D, 4yyj:E, 4yyk:A, 4yyk:B, 4yyk:D, 4yyk:E, 4z6h:A, 4z6h:B, 4z6i:A, 4z6i:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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