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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVF
KGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSAR
DMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGR
TFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPL
QKNQVVGTINFQLDGKTIEQRPLVVLQEIPEG

The query sequence (length=352) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ntz:A 367 352 1.0000 0.9591 1.0000 0.0 3beb:A, 3bec:A, 5j8x:A, 3mzd:A, 3mze:A, 3mzf:A, 1z6f:A
2 3itb:D 351 343 0.6364 0.6382 0.6531 5.41e-169 3it9:A, 3it9:B, 3ita:A, 3ita:D, 3itb:C
3 5tr7:A 251 252 0.4460 0.6255 0.6230 3.66e-110
4 7kcv:A 362 320 0.2301 0.2238 0.2531 7.79e-22 6c39:A, 6dz8:A, 6dz8:B, 3hum:A, 3hum:B, 3hun:A, 3hun:B, 7kcw:A, 7kcx:A, 7kcy:A, 5tw4:A, 5tw4:B, 5tw8:A, 5tw8:B, 5tx9:A, 5tx9:B, 5txi:A, 5txi:B, 5ty2:A, 5ty2:B, 5ty7:A, 5ty7:B
5 5zqa:A 248 240 0.1989 0.2823 0.2917 6.17e-19 5zqb:A, 5zqb:B, 5zqb:C, 5zqb:D, 5zqc:A, 5zqc:B, 5zqc:C, 5zqc:D, 5zqd:A, 5zqd:B, 5zqd:C, 5zqd:D, 5zqd:E, 5zqd:F, 5zqd:G, 5zqd:H, 5zqe:A, 5zqe:B, 5zqe:C, 5zqe:D, 5zqe:E, 5zqe:F, 5zqe:G, 5zqe:H
6 4ppr:A 300 258 0.1989 0.2333 0.2713 3.67e-14
7 6db7:H 234 44 0.0455 0.0684 0.3636 4.0 6db7:I
8 8dp7:A 265 75 0.0625 0.0830 0.2933 4.5 8dp7:B, 8dp7:C, 8dp7:D, 8dp7:E
9 6vtt:H 143 38 0.0426 0.1049 0.3947 4.9
10 5zza:P 119 67 0.0483 0.1429 0.2537 5.7
11 7r2k:Y 333 120 0.0824 0.0871 0.2417 6.2 7tr8:C, 7tr9:C, 7tra:B
12 6hqi:A 444 52 0.0540 0.0428 0.3654 8.6
13 6ox1:B 484 22 0.0312 0.0227 0.5000 9.7 6ict:A, 6ict:B, 6ict:C, 6ict:D, 6icv:A, 6icv:B, 6jat:A, 6jat:C, 7lms:A, 6mbj:A, 6mbj:B, 6mbk:A, 6mbk:B, 6mbl:A, 6ox0:A, 6ox0:B, 6ox1:A, 6ox2:A, 6ox2:B, 6ox3:A, 6ox3:B, 6ox4:A, 6ox4:B, 6ox5:A, 3smt:A, 6v62:A, 6v63:A, 6v63:B, 7w28:A, 7w29:A, 6wk1:A, 6wk1:B, 6wk2:A, 6wk2:D, 8x77:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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