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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESM
NIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMG
TGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKS
KDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLG
TALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAP
GAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLL

The query sequence (length=439) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7p61:F 442 439 1.0000 0.9932 1.0000 0.0 7awt:F, 7nyr:F, 7nyu:F, 7nyv:F, 7nz1:F, 7p62:F, 7p63:F, 7p64:F, 7p69:F, 7p7c:F, 7p7e:F, 7p7j:F, 7p7k:F, 7p7l:F, 7p7m:F, 7z7r:F, 7z7s:F, 7z7t:F, 7z7v:F, 7z80:F, 7z83:F, 7z84:F, 7zc5:F, 7zci:F
2 4hea:1 437 405 0.4533 0.4554 0.4914 1.03e-133 2fug:1, 2fug:A, 2fug:J, 2fug:S, 4hea:B, 6i0d:1, 6i0d:B, 6i1p:1, 6i1p:B, 3i9v:1, 3i9v:A, 3iam:1, 3iam:A, 3ias:1, 3ias:A, 3ias:J, 3ias:S, 3m9s:1, 3m9s:A, 6q8o:1, 6q8o:B, 6q8w:1, 6q8w:B, 6q8x:1, 6q8x:B, 6y11:1, 6y11:B, 2ybb:1, 6ziy:1, 6zjl:1, 6zjn:1, 6zjy:1
3 8e9h:F 436 423 0.4556 0.4587 0.4728 2.13e-126 8e9g:F, 8e9i:F
4 7t2r:B 425 404 0.4123 0.4259 0.4480 1.39e-115 7t2r:G, 7t30:B, 7t30:G
5 8qby:F 421 395 0.3986 0.4157 0.4430 8.38e-114
6 8a6t:B 630 404 0.3941 0.2746 0.4282 4.17e-110 8a6t:E, 8bew:B, 8bew:E
7 7arc:F 430 388 0.3941 0.4023 0.4459 6.26e-110 7ard:F
8 7p8n:B 613 399 0.3918 0.2806 0.4311 1.67e-108 7p5h:B, 7p5h:E, 7p5h:b, 7p5h:e, 7p8n:b, 7p91:b, 7p91:B, 7p92:B
9 8oh5:B 584 404 0.4077 0.3065 0.4431 6.00e-108 8oh5:E, 8oh5:H, 8oh5:K, 8oh9:B, 8oh9:E, 8oh9:H, 8oh9:K
10 8b9z:F 441 375 0.3804 0.3787 0.4453 1.34e-107 8ba0:F, 8esw:V1, 8esz:V1
11 7v2c:A 433 387 0.3872 0.3926 0.4393 1.34e-107 7ak5:F, 7ak6:F, 7b93:F, 8c2s:F, 8ca3:F, 8ca4:F, 8ca5:F, 7dgq:8, 7dgr:8, 7dgs:8, 7dgz:8, 7dh0:8, 7dkf:82, 6g2j:F, 6g72:F, 5gpn:c, 5gup:B, 8iao:F, 8iap:F, 8ib4:F, 8ib5:F, 8ib9:F, 8iba:F, 8ibd:F, 8ibe:F, 8ic2:F, 8ic3:F, 5lc5:F, 5ldw:F, 5ldx:F, 5lnk:1, 5o31:F, 8olt:F, 8om1:F, 7psa:F, 8pw5:1, 8pw6:1, 8pw7:1, 8q0a:F, 8q0f:F, 8q0j:F, 8q0m:F, 8q0o:F, 8q0q:F, 8q1p:F, 8q1u:F, 8q1y:F, 8q25:F, 8q45:F, 8q46:F, 8q47:F, 8q48:F, 8q49:F, 8q4a:F, 6q9d:V1, 6qa9:V1, 6qbx:V1, 6qc2:V1, 6qc3:V1, 6qc4:V1, 6qc5:V1, 6qc6:V1, 6qc7:V1, 6qc8:V1, 6qc9:V1, 6qca:V1, 6qcf:V1, 7qsd:F, 7qsk:F, 7qsl:F, 7qsm:F, 7qsn:F, 7qso:F, 7r41:F, 7r42:F, 7r43:F, 7r44:F, 7r45:F, 7r46:F, 7r47:F, 7r48:F, 7r4c:F, 7r4d:F, 7r4f:F, 7r4g:F, 8rgp:1, 8rgq:1, 8rgr:1, 8rgt:1, 8ud1:1F, 8ueo:1F, 8uep:1F, 8ueq:1F, 8uer:1F, 8ues:1F, 8uet:1F, 8ueu:1F, 8uev:1F, 8uew:1F, 8uex:1F, 8uey:1F, 8uez:1F, 8ugh:1F, 8ugi:1F, 8ugj:1F, 8ugn:1F, 8ugn:5F, 8ugr:1F, 8ugr:5F, 7v2d:A, 7v2e:A, 7v2f:A, 7v2h:A, 7v2k:A, 7v2r:A, 7v30:A, 7v31:A, 7v32:A, 7v33:A, 7v3m:A, 7vb7:A, 7vbn:A, 7vbz:A, 7vwj:A, 7vxp:A, 7vxu:A, 7vy8:A, 7vya:A, 7vyf:A, 7vyh:A, 7vyn:A, 7vz1:A, 7vzv:A, 7vzw:A, 7w00:A, 7w0h:A, 7w0r:A, 7w0y:A, 7w1o:A, 7w1p:A, 7w1t:A, 7w1u:A, 7w1v:A, 7w1z:A, 7w20:A, 7w2k:A, 7w2l:A, 7w2r:A, 7w2u:A, 7w2y:A, 7w31:A, 7w32:A, 7w35:A, 7w4c:A, 7w4d:A, 7w4e:A, 7w4f:A, 7w4g:A, 7w4j:A, 7w4k:A, 7w4l:A, 7w4m:A, 7w4n:A, 7w4q:A, 5xtb:A, 5xtd:A, 5xth:A, 5xti:A, 5xti:BA, 7zd6:1, 7zdh:1, 7zdj:1, 7zdm:1, 7zdp:1, 7zeb:1, 6zk9:1, 6zkc:1, 6zkd:1, 6zke:1, 6zkf:1, 6zkg:1, 6zkh:1, 6zki:1, 6zkj:1, 6zkk:1, 6zkl:1, 6zkm:1, 6zkn:1, 6zko:1, 6zkp:1, 6zkq:1, 6zkr:1, 6zks:1, 6zkt:1, 6zku:1, 6zkv:1, 6zr2:F, 6ztq:F
12 7q4v:B 599 405 0.3964 0.2905 0.4296 5.56e-107 8a5e:B, 7q4v:F, 7q4w:B, 7q4w:F
13 9fdv:B 419 395 0.4032 0.4224 0.4481 1.11e-106 9fdj:B, 9fdj:D, 9fdk:B, 9fdk:D, 9fdv:D, 9fe0:B, 9fe0:D, 9fe5:B, 9fe5:D, 9fe7:B, 9fe7:D, 9fe8:B, 9fe8:D, 9fea:B, 9fea:D, 9fif:B, 9fif:D, 9fih:B, 9fih:D, 9fii:B, 9fii:D, 9fij:B, 9fij:D, 9fil:B, 9fil:D, 6hl2:B, 6hl2:D, 6hl3:B, 6hl3:D, 6hl4:B, 6hl4:D, 6hla:B, 6hla:D, 6hli:B, 6hli:D, 6hlj:B, 6hlj:D, 6hlm:B, 6hlm:D, 7q5y:C, 7q5y:I, 7q5y:O, 7q5y:U, 6q9c:B, 6q9c:D, 6q9g:B, 6q9g:D, 6q9j:B, 6q9j:D, 6q9k:B, 6q9k:D, 8qg1:B, 8qg1:D, 8qgw:B, 8qgw:D, 8qh4:B, 8qh4:D, 8qh7:B, 8qh7:D, 8qhk:B, 8qhk:D, 6r7p:B, 6r7p:D, 6saq:B, 6saq:D
14 7zm7:B 456 384 0.3804 0.3662 0.4349 4.40e-105 7zmb:B, 7zmg:B
15 7aqr:F 434 370 0.3713 0.3756 0.4405 3.15e-104 7a23:A, 7a24:A, 7ar7:F, 7ar8:F, 7arb:F, 8bed:F, 8bpx:F, 8bq5:F, 8bq6:F, 8e73:V1, 6x89:V1
16 8gym:v1 442 387 0.3713 0.3688 0.4212 2.75e-102 8b6f:AD, 8bqs:AD, 8gym:V1, 8gzu:v1, 8gzu:V1, 7tgh:V1
17 6vw7:D 514 407 0.3895 0.3327 0.4201 8.21e-102 6vw7:B, 6vw8:B, 6vw8:D
18 8iuf:V1 504 431 0.3895 0.3393 0.3968 5.86e-99 8j9h:V1, 8j9i:V1, 8j9j:V1
19 7b0n:F 460 381 0.3531 0.3370 0.4068 1.48e-97 6gcs:B, 7o6y:B, 7o71:B, 6rfq:B, 6rfr:B, 6rfs:B, 6y79:B, 6yj4:F
20 6tg9:B 493 402 0.3622 0.3225 0.3955 2.11e-87 6tg9:F, 6tga:B, 6tga:F
21 7vw6:B 560 397 0.3371 0.2643 0.3728 2.12e-69 7e5z:B, 8j83:B, 7xqw:B
22 5xfa:A 581 409 0.3417 0.2582 0.3667 4.59e-65 5xf9:A, 5xf9:E, 5xfa:E
23 7zc6:C 435 358 0.1982 0.2000 0.2430 2.34e-13
24 8rbq:C 477 131 0.0797 0.0734 0.2672 0.014 8ahx:C, 8rb8:C, 8rb9:C, 8rbm:C
25 6ycq:A 347 59 0.0456 0.0576 0.3390 0.87 4ldx:A, 4ldx:B, 6ycq:B
26 8tl9:D 2034 48 0.0342 0.0074 0.3125 1.4 8tla:D
27 6uqk:A 2054 48 0.0342 0.0073 0.3125 1.5 6uqk:B, 6uqk:C, 6uqk:D
28 8tkf:A 2272 48 0.0342 0.0066 0.3125 1.6 8tkf:D, 8tkf:B, 8tkf:C
29 7t3r:A 2130 48 0.0342 0.0070 0.3125 1.6 7t3r:B, 7t3r:C, 7t3r:D, 7t3t:A, 7t3t:B, 7t3t:C, 7t3t:D
30 6dr0:C 2193 48 0.0342 0.0068 0.3125 1.7 6dqj:A, 6dqj:B, 6dqj:C, 6dqj:D, 6dqn:A, 6dqn:B, 6dqn:C, 6dqn:D, 6dqs:A, 6dqs:B, 6dqs:C, 6dqs:D, 6dqv:A, 6dqv:B, 6dqv:C, 6dqv:D, 6dqz:A, 6dqz:B, 6dqz:D, 6dqz:C, 6dr0:A, 6dr0:B, 6dr0:D, 6dr2:A, 6dr2:B, 6dr2:C, 6dr2:D, 6dra:A, 6dra:B, 6dra:C, 6dra:D, 6drc:A, 6drc:B, 6drc:C, 6drc:D
31 8tk8:A 2268 48 0.0342 0.0066 0.3125 1.7 8tk8:B, 8tk8:C, 8tk8:D, 8tkh:A, 8tkh:B, 8tkh:C, 8tkh:D, 8tki:A, 8tki:B, 8tki:C, 8tki:D, 8tl9:C, 8tla:C
32 8tkd:A 2249 48 0.0342 0.0067 0.3125 1.7 8tkd:B, 8tkd:C, 8tkd:D, 8tke:A, 8tke:B, 8tke:C, 8tke:D, 8tkg:A, 8tkg:B, 8tkg:C, 8tkg:D, 8tl9:A, 8tl9:B, 8tla:A, 8tla:B
33 7t3q:A 2103 47 0.0342 0.0071 0.3191 2.1 7t3q:B, 7t3q:C, 7t3q:D, 7t3u:B
34 7t3p:A 2066 47 0.0342 0.0073 0.3191 2.2 7t3p:B, 7t3p:C, 7t3p:D
35 8hi5:A 647 32 0.0342 0.0232 0.4688 2.5
36 7tbj:A5 1276 98 0.0569 0.0196 0.2551 3.5 5hax:A, 5hb0:B, 5hb0:C, 5hb0:A, 7tbi:A1, 7tbi:A2, 7tbi:A3, 7tbi:A4, 7tbj:A1, 7tbj:A3, 7tbj:A6, 7tbk:A1, 7tbk:A3, 7tbk:A5, 7tbk:A6, 7tbl:A1, 7tbl:A3, 7tbl:A5, 7tbl:A6, 7tbm:A1, 7tbm:A3, 7tbm:A5, 7tbm:A6
37 4kvq:A 223 20 0.0251 0.0493 0.5500 5.2 4kvr:A, 4kvs:A, 2oc5:A, 4pg0:A, 4pg1:A, 4pgi:A, 4pgk:A, 4tw3:A
38 7eju:A 1648 127 0.0729 0.0194 0.2520 5.3
39 8hzv:A 479 75 0.0524 0.0480 0.3067 6.3 8hzv:B, 8hzv:C, 8hzv:D, 8hzy:A, 8hzy:B
40 6zaz:A 555 48 0.0342 0.0270 0.3125 7.7 8aa0:B, 8aa0:J, 8aa1:B, 8aa1:J, 8aa2:B, 8aa2:J, 8aa3:B, 8aa3:J, 5t3r:A, 5t4y:A, 5t4y:B, 6z8i:A, 6z9a:A
41 5x4z:N 1074 33 0.0296 0.0121 0.3939 8.6 5x4z:B, 5x51:B, 5x51:N
42 7t3u:C 1575 47 0.0342 0.0095 0.3191 9.3
43 7b04:B 1120 41 0.0364 0.0143 0.3902 9.5 7b04:E, 7b04:H, 7b04:K, 7b04:N, 7b04:Q, 7b04:T, 7b04:W

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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