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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NIIEKKYRSNINDKIEQLRRTVPTLRVAYKKCNDLPITSRDLADLDGLEPATKLNKASILTKSIEYICHLERKCLQLSLA
NQH

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8hov:A 87 83 1.0000 0.9540 1.0000 1.32e-56 8hov:C, 8hov:B, 8hov:D, 8hov:E, 8hov:F
2 7f2f:B 94 71 0.3253 0.2872 0.3803 1.60e-06 7f2f:A
3 7d8t:A 199 73 0.2892 0.1206 0.3288 9.03e-05 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
4 1am9:C 82 81 0.3494 0.3537 0.3580 1.18e-04 1am9:D, 1am9:A, 1am9:B
5 1hlo:A 80 73 0.2530 0.2625 0.2877 0.003
6 5eyo:C 88 73 0.2530 0.2386 0.2877 0.003 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
7 2gtt:P 399 21 0.1084 0.0226 0.4286 1.1
8 8ffr:K 420 21 0.1084 0.0214 0.4286 1.1 8ffr:A, 8ffr:B, 8ffr:C, 8ffr:D, 8ffr:E, 8ffr:F, 8ffr:G, 8ffr:H, 8ffr:I, 8ffr:J, 8ffr:L, 8ffr:M, 8ffr:N, 8ffr:O, 8ffr:P, 8ffr:Q, 8ffr:R, 8ffr:S, 8ffr:T, 8ffr:U, 8ffr:V, 2gtt:A, 2gtt:B, 2gtt:C, 2gtt:D, 2gtt:E, 2gtt:F, 2gtt:G, 2gtt:H, 2gtt:I, 2gtt:J, 2gtt:K, 2gtt:L, 2gtt:M, 2gtt:N, 2gtt:O, 2gtt:Q, 2gtt:R, 2gtt:S, 2gtt:T, 2gtt:U, 2gtt:V
9 5m5i:C 369 33 0.1687 0.0379 0.4242 1.1 5m5l:C, 5m5m:C, 5m5n:C, 5m5o:C
10 6s8m:K 344 33 0.1687 0.0407 0.4242 1.2
11 1qyp:A 57 44 0.1446 0.2105 0.2727 3.8
12 8osl:N 290 35 0.1446 0.0414 0.3429 4.6 4h10:A, 8osk:N, 8osl:P
13 4rn7:A 186 40 0.1566 0.0699 0.3250 7.0
14 3ff6:A 750 45 0.1446 0.0160 0.2667 8.8 3ff6:B, 3ff6:C, 3ff6:D, 3tdc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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