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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NIEPVIIETRLELIGRYLDHLKKFENISLDDYLSSFEQQLITERLLQLITQAAIDINDHILSKLKSGKSYTNFEAFIELG
KYQILTPELAKQIAPSSGLANRLVHEYDDIDPNQVFMAISFALQQYPLYVRQINSYLITLEEENDLE

The query sequence (length=147) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ae6:A 147 147 1.0000 1.0000 1.0000 2.23e-104 7ae6:B, 7ae9:B, 7ae9:A
2 7aer:B 133 85 0.1429 0.1579 0.2471 4.60e-04 7aer:C, 7bxo:H, 6m6v:B, 6m6v:C, 6m6v:D
3 6o1e:A 431 69 0.1769 0.0603 0.3768 0.60 5ix1:B, 5ix2:A, 5ix2:B, 4qq4:A, 4qq4:B, 5svi:A, 5svi:B, 5svx:A, 5svy:A
4 8pqw:A 2892 88 0.1973 0.0100 0.3295 1.6 8pqy:A, 8pqz:A, 8pqz:J
5 5nug:A 2920 88 0.1973 0.0099 0.3295 1.6 5nug:B
6 8ptk:f 4502 88 0.1973 0.0064 0.3295 1.6 8ptk:e
7 1r8d:A 109 31 0.0884 0.1193 0.4194 3.1 1r8d:B
8 3tqp:A 418 61 0.1497 0.0526 0.3607 4.2 3tqp:B
9 6gtd:A 1269 50 0.0884 0.0102 0.2600 4.8 6i1l:D, 5nfv:A, 5ng6:A, 5ng6:C, 5ng6:E, 5ng6:G
10 6gtg:A 1298 50 0.0884 0.0100 0.2600 5.0 6gtc:A, 6gte:A, 6gtf:A, 6i1k:A, 6i1l:A
11 6xtx:3 608 83 0.1837 0.0444 0.3253 8.4
12 6wl3:F 238 40 0.0680 0.0420 0.2500 8.9 6wl2:C, 6wl2:F, 6wl2:I, 6wl3:C, 6wl3:I, 6wl4:F, 6wl4:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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