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BioLiP
>protein
NIEPVIIETRLELIGRYLDHLKKFENISLDDYLSSFEQQLITEELLQLITQAAIDINDHILSKLKSGKSYTNFEAFIELG
KYQILTPELAKQIAPSSGLREYDDIDPNQVFMAISFALQQYPLYVRQINSYLITLEE

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ae6:A 147 142 0.9854 0.9184 0.9507 2.80e-92 7ae6:B, 7ae9:B, 7ae9:A
2 6o1e:A 431 79 0.2190 0.0696 0.3797 0.097 5ix1:B, 5ix2:A, 5ix2:B, 4qq4:A, 4qq4:B, 5svi:A, 5svi:B, 5svx:A, 5svy:A
3 7aer:B 133 85 0.1387 0.1429 0.2235 0.27 7aer:C, 7bxo:H, 6m6v:B, 6m6v:C, 6m6v:D
4 4jgt:A 280 70 0.1168 0.0571 0.2286 1.6 4jgt:B, 4jgt:C
5 5nug:A 2920 88 0.2117 0.0099 0.3295 1.7 5nug:B
6 8pqw:A 2892 88 0.2117 0.0100 0.3295 1.9 8pqy:A, 8pqz:A, 8pqz:J
7 8ptk:f 4502 88 0.2117 0.0064 0.3295 1.9 8ptk:e
8 6xtx:3 608 98 0.2263 0.0510 0.3163 2.5
9 6mso:A 540 57 0.1168 0.0296 0.2807 2.9 6mso:B, 6mso:C, 6mso:D
10 6eri:AD 221 58 0.1314 0.0814 0.3103 5.2 5h1s:F, 5mlc:E, 5mmi:D, 5mmm:D, 5x8p:D, 5x8t:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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