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BioLiP
>protein
NIDDLLGDLGGTARAERAKLVEWLLEQGITPDEIRATNPPLLLATRHLVGDDGTYVSAREISENYGVDLELLQRVQRAVG
LARVDDPDAVVHMRADGEAAARAQRFVELGLNPDQVVLVVRVLAEGLSHAAEAMRYTALEAIMRPGATELDIAKGSQALV
SQIVPLLGPMIQDMLFMQLRHMME

The query sequence (length=184) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1y10:C 363 184 1.0000 0.5069 1.0000 3.49e-128 2ev1:A, 2ev1:B, 2ev2:A, 2ev2:B, 2ev3:A, 2ev3:B, 2ev4:A, 2ev4:B, 1y10:A, 1y10:B, 1y10:D
2 6vjb:A 1346 72 0.1304 0.0178 0.3333 0.006
3 5xya:A 1358 72 0.1304 0.0177 0.3333 0.008 5xxz:A
4 7edd:A 1394 72 0.1304 0.0172 0.3333 0.008 5xyr:A
5 5xxz:B 1310 72 0.1304 0.0183 0.3333 0.009
6 1ecx:B 365 84 0.1467 0.0740 0.3214 2.2 1ecx:A, 1eg5:A, 1eg5:B
7 3iv6:A 257 40 0.0761 0.0545 0.3500 4.6 3iv6:B, 3iv6:C, 3iv6:D
8 3ijh:B 221 20 0.0598 0.0498 0.5500 5.6 3ijh:D, 3ijs:B, 3ijs:D, 3ijy:B, 3ijy:D, 3ikc:B, 3ikc:D
9 3bje:A 327 59 0.1250 0.0703 0.3898 6.2 3bje:B
10 7xxf:C 343 57 0.0815 0.0437 0.2632 6.7
11 5oyn:A 589 62 0.0924 0.0289 0.2742 7.3 5oyn:B, 5oyn:C, 5oyn:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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