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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NHPLLKKILMKAPGTYHHSMMVANLAEACADKIGANSLLVRVGCFYHDIGKTLRPPYFVENQLQGINPHDRLTPEQSRDI
ILSHTKDGAEILKENHMPQPIIDIALQHHGTTLLKYFYFKAKEVKEADYRYSGPKPQTKEIAIINISDSVEAAVRSSTEP
TMAKITEIIDGIIKDRFLDGQFTECDITIQEIKIIRDTLIATLNGIYH

The query sequence (length=208) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4s1b:D 214 211 0.9952 0.9673 0.9810 1.15e-152 4s1b:A, 4s1c:D, 4s1c:A
2 3tmb:B 318 102 0.1490 0.0975 0.3039 0.027 3tm8:A, 3tm8:B, 3tmb:A, 3tmc:A, 3tmc:B, 3tmd:A
3 6ky3:A 353 85 0.1154 0.0680 0.2824 1.0
4 7odf:A 703 60 0.0865 0.0256 0.3000 2.9
5 7ux9:P 468 87 0.1154 0.0513 0.2759 3.0
6 8kcc:K 508 87 0.1154 0.0472 0.2759 3.4 8j90:K, 8kcb:K, 8wh5:K, 8wh8:K, 8wh9:K, 8wha:K, 8wha:L
7 8f4r:B 1033 19 0.0529 0.0106 0.5789 5.9
8 8i23:D 1154 82 0.1346 0.0243 0.3415 6.6 8i24:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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