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BioLiP
>protein
NGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALR
LMLQLVIVVALVVYVIYGFVVVWGV

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2acz:D 113 105 1.0000 0.9292 1.0000 3.05e-69 7jz2:D, 7jz2:H, 7jz2:L, 1nek:D, 1nen:D, 2wdq:D, 2wdq:H, 2wdq:L, 2wdr:D, 2wdr:H, 2wdr:L, 2wdv:D, 2wdv:H, 2wdv:L, 2wp9:D, 2wp9:H, 2wp9:L, 2ws3:D, 2ws3:H, 2ws3:L, 2wu2:D, 2wu2:H, 2wu2:L, 2wu5:D, 2wu5:H, 2wu5:L, 6wu6:D, 6wu6:H, 6wu6:L
2 7kv8:A 493 43 0.1333 0.0284 0.3256 2.3 7kv8:B, 7kv8:C, 5n09:A, 5n09:B, 5n0a:A, 5n0a:B, 1oan:A, 1oan:B, 1oke:A, 1oke:B, 4ut6:A, 4ut6:B, 4uta:A, 4utb:A, 4utb:B, 4utc:A, 4utc:B
3 7t3r:A 2130 63 0.1429 0.0070 0.2381 2.3 7t3r:B, 7t3r:C, 7t3r:D, 7t3t:A, 7t3t:B, 7t3t:C, 7t3t:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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