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BioLiP
>protein
NGKLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLRCA
LNKSNDFEELVERSQLDISDPYKVYRIVP

The query sequence (length=109) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7o56:A 114 109 1.0000 0.9561 1.0000 2.64e-78 8jkl:C, 8jkl:D, 8jkl:G, 8jkl:H, 8jkn:C, 8jkn:D, 8jkn:G, 8jkn:H, 8jko:C, 8jko:D, 8jko:G, 8jko:H, 8jkq:D, 8jkq:G, 8jkq:F, 8jkq:H, 8jks:C, 8jks:D, 8jks:G, 8jks:H, 7jm4:B, 7jm4:A, 7jm4:G, 7jm4:H, 7o56:B, 7o56:C, 7ogs:A, 7ogs:B, 7ogs:E, 7ogs:F, 7oot:A, 7oot:B, 7rh2:G, 7rh2:H, 7rh2:A, 7rh2:B
2 8hcl:A 109 106 0.7431 0.7431 0.7642 1.01e-59 8hcl:B
3 2irf:H 109 107 0.4771 0.4771 0.4860 9.20e-35 2irf:I, 2irf:J, 2irf:K, 2irf:L, 2irf:G
4 8hcm:A 100 106 0.4404 0.4800 0.4528 2.97e-32
5 1if1:A 105 105 0.4312 0.4476 0.4476 1.14e-31 1if1:B
6 2o61:A 498 102 0.4128 0.0904 0.4412 1.30e-22 9bdu:A, 9bdu:B, 9bdv:A, 9bdv:B, 9bdw:A, 9bdw:B, 9bdx:A, 9bdx:B, 3gut:A, 3gut:C, 3gut:E, 3gut:G, 2i9t:A, 1le5:A, 1le5:E, 1le9:A, 1le9:E, 1lei:A, 2o6g:E, 2o6g:F, 2o6g:G, 2o6g:H, 2pi0:A, 2pi0:B, 2pi0:C, 2pi0:D, 3qu6:A, 3qu6:B, 3qu6:C, 1ram:A, 1ram:B, 2ram:A, 2ram:B, 1t2k:A, 1t2k:B, 5u01:A, 5u01:B, 5u01:C, 5u01:D, 1vkx:A
7 2o61:A 498 106 0.3761 0.0823 0.3868 9.79e-17 9bdu:A, 9bdu:B, 9bdv:A, 9bdv:B, 9bdw:A, 9bdw:B, 9bdx:A, 9bdx:B, 3gut:A, 3gut:C, 3gut:E, 3gut:G, 2i9t:A, 1le5:A, 1le5:E, 1le9:A, 1le9:E, 1lei:A, 2o6g:E, 2o6g:F, 2o6g:G, 2o6g:H, 2pi0:A, 2pi0:B, 2pi0:C, 2pi0:D, 3qu6:A, 3qu6:B, 3qu6:C, 1ram:A, 1ram:B, 2ram:A, 2ram:B, 1t2k:A, 1t2k:B, 5u01:A, 5u01:B, 5u01:C, 5u01:D, 1vkx:A
8 4hly:B 106 30 0.1376 0.1415 0.5000 1.49e-06
9 7z51:A 494 22 0.0917 0.0202 0.4545 1.3 7z51:B, 7z51:C
10 1k1x:A 636 51 0.1009 0.0173 0.2157 5.0 1k1w:A, 1k1x:B, 1k1y:A, 1k1y:B
11 2h92:A 216 19 0.0826 0.0417 0.4737 9.6 2h92:B, 2h92:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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