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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NGHLQHHPPMPPISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARL
HIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQ
AAAVAGNAPAISLSAAAGIGVDDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIADPQPL
D

The query sequence (length=241) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1dd1:B 249 249 1.0000 0.9679 0.9679 4.90e-178 1dd1:A, 1dd1:C
2 6m64:A 203 217 0.4025 0.4778 0.4470 3.81e-54 7co1:A, 7co1:C, 7co1:E, 6m64:C, 6m64:E, 5xod:A, 6zvq:A
3 4kbz:A 231 99 0.0830 0.0866 0.2020 0.77 5a3u:B, 5a3u:C, 4bqw:A, 4bqx:A, 4bqy:A, 2g19:A, 2g1m:A, 2hbt:A, 2hbu:A, 3hqr:A, 3hqu:A, 4jzr:A, 5l9b:A, 5l9b:B, 5l9r:A, 5l9v:A, 5l9v:B, 5la9:A, 5la9:B, 5las:A, 5las:B, 5lat:A, 5lb6:A, 5lbb:A, 5lbc:A, 5lbe:A, 5lbf:A, 6nmq:A, 3ouh:A, 3oui:A, 3ouj:A, 5ox5:A, 5ox6:A, 7q5v:A, 7q5x:A, 8q5s:A, 8q64:A, 8q6d:A, 8q6e:A, 6st3:A, 6st3:B, 7ujv:B, 7ump:A, 4uwd:A, 5v18:A, 2y33:A, 2y34:A, 6yvt:B, 6yvt:D, 6yvw:A, 6yvx:A, 6yvz:A, 6yw0:A, 6yw1:A, 6yw2:A, 6yw3:A, 6yw4:A, 6zbn:B, 6zbn:D, 6zbo:A, 6zbo:C, 6zbo:D
4 2zwa:B 683 80 0.0871 0.0307 0.2625 1.7 2zw9:A, 2zw9:B, 2zwa:A
5 5olu:A 310 50 0.0788 0.0613 0.3800 2.6
6 5y7w:A 125 38 0.0664 0.1280 0.4211 2.7 5nwx:A, 1oj5:A, 5y7w:B
7 2pop:D 80 28 0.0581 0.1750 0.5000 7.3 6gjw:A, 6gjw:B, 6gjw:C, 6gjw:D, 4mtz:A, 4mtz:B, 4mtz:C, 4mtz:D, 4oxc:A, 4oxc:B, 4oxc:C, 4oxc:D, 2poi:A, 2pop:B, 6qci:A, 6qci:B, 6qci:C, 6qci:D, 2qra:D, 2qra:C, 2qra:B, 2qra:A
8 4ac9:C 471 27 0.0456 0.0234 0.4074 9.9 4ac9:A, 4ac9:B, 4aca:B, 4aca:C, 4acb:A, 4acb:B, 4acb:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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