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BioLiP
>protein
NFPRTVMVNLNIHNSDYYDRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNSVPIQQEILVLRREPPHS
PNSFRLEKILVSVGCTCVTPI

The query sequence (length=101) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5vb9:A 108 101 1.0000 0.9352 1.0000 6.88e-73 7ama:A, 7ama:B, 7amg:A, 7amg:B, 7amg:C, 7amg:D, 8cdg:A, 8cdg:B, 8dyf:A, 8dyf:B, 8dyg:A, 8dyg:B, 8dyh:A, 8dyh:B, 8dyi:A, 8dyi:B, 5hhv:A, 5hhx:A, 5hi3:A, 5hi3:B, 5hi4:A, 5hi4:B, 5hi5:A, 5hi5:B, 8usr:A, 8usr:B, 8usr:D, 5vb9:B
2 8uss:A 107 108 0.9010 0.8505 0.8426 4.97e-59
3 3jvf:B 104 83 0.5149 0.5000 0.6265 5.13e-33
4 8opp:A 670 45 0.1287 0.0194 0.2889 0.33
5 8opt:A 783 45 0.1287 0.0166 0.2889 0.73 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
6 8htu:H 95 18 0.0891 0.0947 0.5000 0.77 7ksq:H, 7kux:H, 6l35:H, 7xqp:H
7 6z1p:AR 274 81 0.2376 0.0876 0.2963 2.5
8 1ygp:A 858 30 0.0891 0.0105 0.3000 2.5 1ygp:B
9 2iag:A 471 51 0.1287 0.0276 0.2549 5.3 3b6h:A, 3b6h:B, 2iag:B
10 5by6:B 288 72 0.1683 0.0590 0.2361 6.5 5by6:A, 5by6:C, 5by6:D, 5m4z:A, 5m4z:B
11 8jjm:A 484 43 0.1386 0.0289 0.3256 7.4 8jjm:B
12 4pu5:A 438 20 0.0891 0.0205 0.4500 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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