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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NFPEYELPELNTRAFHVGAFGELWRGRLRGAGDLSLREPADSDREDAAVARDLDCSLEAAAELRAVCGLDKLDPEVIPEN
TDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGELILSVNILYPVIFHKHKEHKPYQTM
LVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKF
QTARMEDFTFNDLCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARWVTNN
DSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN

The query sequence (length=363) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ity:3 374 368 0.9945 0.9652 0.9810 0.0 8iue:3, 8iuh:3, 7xur:B, 7zwc:b, 7zwd:b, 7zx7:b, 7zx8:b, 7zxe:b
2 3efw:B 242 44 0.0496 0.0744 0.4091 1.3 3efw:A, 3w18:A, 3w18:B, 2wqe:A
3 2o4v:A 411 74 0.0579 0.0511 0.2838 1.8 2o4v:B, 2o4v:C
4 1x4k:A 72 39 0.0331 0.1667 0.3077 4.1
5 5jhf:F 405 49 0.0468 0.0420 0.3469 6.9 5jhf:C, 4p1w:C
6 5zjr:A 64 25 0.0303 0.1719 0.4400 9.7 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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