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BioLiP
>protein
NFHDQLKFAWLAGFVDADGCINAQIVSREDYLLKYQVRVSLTVFQSTTQHFILLDIQKILGCGTVRKRNDGMSEFCVVGG
TSLQTTLEKLLPYLQLKRAQAKLVLQIIKKLPNTKDPSVLMEAALLADKVGLLTDGKKRTILAENVRECLKKLGHVV

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5a72:B 158 157 0.9936 0.9873 0.9936 1.26e-113 5a72:A, 5a74:A, 5a74:B, 5a77:A, 5a77:B, 5a78:A, 5a78:B
2 1mow:A 248 153 0.3439 0.2177 0.3529 5.73e-23 1mow:D, 1mow:G, 1mow:J
3 2fld:A 161 126 0.3057 0.2981 0.3810 9.94e-22 3ko2:A, 3ko2:B, 3ko2:F, 3ko2:G, 1m5x:A, 1m5x:B, 3mis:A, 3mis:B
4 3fd2:A 338 126 0.3057 0.1420 0.3810 1.75e-21 2fld:B, 3mip:A, 3mip:B
5 3fd2:A 338 126 0.3057 0.1420 0.3810 1.75e-21 2fld:B, 3mip:A, 3mip:B
6 3mxa:A 301 142 0.3248 0.1694 0.3592 2.52e-21 4aab:A, 4aab:B, 4aad:A, 4aad:B, 4aae:A, 4aae:B, 4aaf:A, 4aaf:B, 4aag:A, 4aag:B, 4aqu:A, 4aqu:B, 4aqx:A, 4aqx:B, 1bp7:A, 1bp7:B, 1bp7:C, 1bp7:D, 6fb0:A, 6fb0:B, 6fb1:A, 6fb1:B, 6fb2:A, 6fb2:B, 6fb5:A, 6fb5:B, 6fb6:A, 6fb6:B, 6fb7:A, 6fb7:B, 6fb8:A, 6fb8:B, 6fb9:A, 6fb9:B, 1g9y:A, 1g9y:B, 1g9z:A, 1g9z:B, 2i3p:A, 2i3p:B, 2i3q:A, 2i3q:B, 3mx9:A, 3mxb:A, 3mxb:B, 3mxb:R, 3mxb:S, 1n3e:A, 1n3e:B, 1n3e:G, 1n3e:H, 1n3f:A, 1n3f:B, 1n3f:G, 1n3f:H, 1t9i:A, 1t9i:B, 1t9j:A, 1t9j:B, 1u0c:A, 1u0c:B, 1u0d:A, 1u0d:B, 2vbj:A, 2vbj:B, 2vbl:A, 2vbl:B, 2vbn:A, 2vbn:B, 2vbo:A, 2vbo:B, 2xe0:A, 2xe0:B
7 3mxa:A 301 142 0.3248 0.1694 0.3592 8.01e-21 4aab:A, 4aab:B, 4aad:A, 4aad:B, 4aae:A, 4aae:B, 4aaf:A, 4aaf:B, 4aag:A, 4aag:B, 4aqu:A, 4aqu:B, 4aqx:A, 4aqx:B, 1bp7:A, 1bp7:B, 1bp7:C, 1bp7:D, 6fb0:A, 6fb0:B, 6fb1:A, 6fb1:B, 6fb2:A, 6fb2:B, 6fb5:A, 6fb5:B, 6fb6:A, 6fb6:B, 6fb7:A, 6fb7:B, 6fb8:A, 6fb8:B, 6fb9:A, 6fb9:B, 1g9y:A, 1g9y:B, 1g9z:A, 1g9z:B, 2i3p:A, 2i3p:B, 2i3q:A, 2i3q:B, 3mx9:A, 3mxb:A, 3mxb:B, 3mxb:R, 3mxb:S, 1n3e:A, 1n3e:B, 1n3e:G, 1n3e:H, 1n3f:A, 1n3f:B, 1n3f:G, 1n3f:H, 1t9i:A, 1t9i:B, 1t9j:A, 1t9j:B, 1u0c:A, 1u0c:B, 1u0d:A, 1u0d:B, 2vbj:A, 2vbj:B, 2vbl:A, 2vbl:B, 2vbn:A, 2vbn:B, 2vbo:A, 2vbo:B, 2xe0:A, 2xe0:B
8 5esp:A 292 75 0.1401 0.0753 0.2933 1.27e-06 5esp:B
9 6uw0:B 295 91 0.1656 0.0881 0.2857 2.40e-05 6uw0:A, 6uwk:A
10 6uw0:B 295 55 0.0955 0.0508 0.2727 0.91 6uw0:A, 6uwk:A
11 6bd0:A 300 88 0.1338 0.0700 0.2386 1.36e-04 6bda:A, 6bdb:A, 3qqy:A, 6uvw:A, 6uvw:D, 6uwg:A, 6uwh:A, 6uwj:A
12 4lq0:A 298 136 0.2038 0.1074 0.2353 4.57e-04
13 4lox:A 300 90 0.1720 0.0900 0.3000 8.55e-04 5e5o:A, 5e5s:A, 5e63:A, 5e67:A, 4z1z:A, 4z1z:B, 4z20:A, 4z20:D
14 4yhx:A 294 87 0.1210 0.0646 0.2184 0.002
15 6bci:A 292 87 0.1465 0.0788 0.2644 0.004 6bce:A, 6bcf:D, 6bcf:A, 6bcf:G, 6bcf:J, 6bcg:D, 6bcg:A, 6bcg:G, 6bcg:J, 6bch:A, 6bch:D, 6bch:H, 6bch:L, 6bcn:A, 6bcn:C, 6bcn:G, 6bcn:J, 6bct:A, 3r7p:A
16 7rcf:A 290 105 0.1656 0.0897 0.2476 0.005 7rcc:D, 7rcc:A, 7rcc:G, 7rcd:A, 7rce:A, 7rcg:A
17 7rcf:A 290 90 0.1465 0.0793 0.2556 1.1 7rcc:D, 7rcc:A, 7rcc:G, 7rcd:A, 7rce:A, 7rcg:A
18 5t8d:A 292 90 0.1274 0.0685 0.2222 0.005 5v0q:A
19 5t8d:A 292 105 0.1592 0.0856 0.2381 0.019 5v0q:A
20 5thg:A 294 105 0.1592 0.0850 0.2381 0.007 5thg:D
21 5thg:A 294 86 0.1274 0.0680 0.2326 0.021 5thg:D
22 5t2o:A 293 86 0.1338 0.0717 0.2442 0.013
23 5t2o:A 293 105 0.1465 0.0785 0.2190 0.25
24 5t2h:A 296 88 0.1274 0.0676 0.2273 0.019
25 5t2h:A 296 60 0.0955 0.0507 0.2500 2.9
26 4efj:B 291 130 0.1975 0.1065 0.2385 0.028 4efj:A, 4z1x:B, 4z1x:A
27 3eh8:A 254 22 0.0573 0.0354 0.4091 0.19 3eh8:D, 3eh8:G, 1p8k:Z, 2qoj:Z
28 3uvf:A 255 22 0.0573 0.0353 0.4091 0.22 3uvf:B
29 4yit:D 277 86 0.1529 0.0866 0.2791 0.37 4yit:A
30 5t2n:A 291 90 0.1274 0.0687 0.2222 1.5
31 3qag:A 238 69 0.1210 0.0798 0.2754 2.0 3q19:A, 3q19:B
32 2wbt:A 125 47 0.1083 0.1360 0.3617 2.1 2wbt:B
33 2b3x:A 888 31 0.0828 0.0146 0.4194 4.1 2b3y:A, 2b3y:B
34 8g40:C 128 46 0.0892 0.1094 0.3043 4.5
35 1dq3:A 454 13 0.0510 0.0176 0.6154 5.7
36 5h1w:A 270 96 0.1592 0.0926 0.2604 8.1 5b7y:A, 5b7y:B, 5b80:A, 5b80:B, 5h1w:B, 5h6h:A, 5h6h:B
37 6lxj:H 226 46 0.0828 0.0575 0.2826 9.5 6b3m:C, 6b3m:I, 6b3m:M, 6b3m:Y, 7bbg:H, 6xp6:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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