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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NESVIESCSNAVQGAANDELKVHYRANEFPDDPVTHCFVRCIGLELNLYDDKYGVDLQANWENLGNSDDADEEFVAKHRA
CLEAKNLETIEDLCERAYSAFQCLREDYEMYQNELWSHP

The query sequence (length=119) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3l4l:A 119 119 1.0000 1.0000 1.0000 8.76e-87 3qme:A
2 6nbn:A 123 84 0.1765 0.1707 0.2500 7.61e-05 6ogh:A, 6oii:A, 6oii:B, 6opb:E, 6opb:F, 6opb:I
3 7tx8:A 295 93 0.2521 0.1017 0.3226 7.27e-04 7tx8:B, 7tx8:C, 7tx8:D
4 6mt7:A 230 49 0.1513 0.0783 0.3673 0.002 6mt7:B, 6mtf:A, 6mtf:B
5 3r72:A 122 98 0.2185 0.2131 0.2653 0.026
6 3nhi:A 295 62 0.1429 0.0576 0.2742 0.072 3nht:A
7 3dye:A 302 24 0.0924 0.0364 0.4583 0.65 3dzt:A
8 5epa:A 258 50 0.1429 0.0659 0.3400 1.4 5epa:B, 5epa:C, 5epa:D, 5epa:E, 5epa:F
9 7rkh:D 559 28 0.1092 0.0233 0.4643 2.4 7rkh:C, 7rkh:A, 7rkh:B, 7rl0:A, 7rl0:D, 7rl0:B, 7rl0:C, 7rl0:E, 7rl0:H, 7rl0:F, 7rl0:G, 7rl0:W, 7rl0:Z, 7rl0:X, 7rl0:Y, 7rl5:A, 7rl5:B, 7rl5:D, 7rl5:C, 7rl5:E, 7rl5:M, 7rl5:R, 7rl5:P, 7rl5:L, 7rl5:O, 7rl5:S, 7rl5:Q, 7rnl:B, 7rnl:C, 7rnl:D, 7rnl:A, 7rnl:H, 7rnl:K, 7rnl:N, 7rnl:E, 7rnl:I, 7rnl:L, 7rnl:O, 7rnl:F, 7rnl:J, 7rnl:M, 7rnl:P, 7rnl:G, 7rnr:A, 7rnr:B, 7rnr:F, 7rnr:E, 7rnr:Q, 7rnr:S, 7rnr:a, 7rnr:Y, 7rnr:I, 7rnr:J, 7rnr:N, 7rnr:M, 7rnr:R, 7rnr:T, 7rnr:b, 7rnr:Z, 7rnr:g, 7rnr:h, 7rnr:l, 7rnr:k
10 5v13:A 268 18 0.0756 0.0336 0.5000 4.8 5v13:B, 5v13:C
11 7mit:E 1438 45 0.1008 0.0083 0.2667 7.3 7mjo:E, 7mjp:E, 7mjq:E, 7y1l:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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