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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NEPPPNICEQCLGDEANIRMTKIPQGSECKICTLPFTLYHFKTSKRSNNIIKTLICVRCATQRNICQCCMLDSRWHIPIQ
LRDHLISLVVMTEEAKNDMMKRFLSLKNVKLGGAQITSDPSEADNIVDKLKNILLSFFLYNSIPEWKITDTVSQLLSLIV
NHKAKCGGLRFQSSELGERFVSKIFIIPWSTAENIKLSLSLNKLIQLEL

The query sequence (length=209) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5mps:N 227 225 1.0000 0.9207 0.9289 5.18e-143 5lj3:N, 5lj5:N, 5mq0:N
2 6exn:N 242 242 0.9952 0.8595 0.8595 3.30e-139 6bk8:F
3 7b9v:N 264 264 0.9952 0.7879 0.7879 7.52e-136
4 7dco:Q 292 288 1.0000 0.7158 0.7257 6.32e-133 6j6g:Q, 6j6h:Q, 6j6n:Q, 6j6q:Q
5 5gm6:Q 185 199 0.8182 0.9243 0.8593 1.57e-118 5gmk:Q, 5wsg:Q, 5ylz:M
6 5y88:M 182 179 0.6794 0.7802 0.7933 2.34e-95
7 3jb9:a 255 189 0.3062 0.2510 0.3386 6.74e-25
8 8ch6:U 295 101 0.1866 0.1322 0.3861 7.18e-17 7a5p:P, 8c6j:M, 6ff4:P, 6ff7:P, 9fmd:O, 8i0p:O, 8i0r:O, 8i0s:O, 8i0t:O, 8i0u:O, 8i0v:O, 8i0w:O, 6icz:O, 6id0:O, 6id1:O, 5mqf:P, 6qdv:M, 7qtt:U, 8ro2:O, 7w59:O, 7w5a:O, 7w5b:O, 5xjc:O, 5yzg:O, 5z56:O, 5z57:O, 6zym:P
9 8ro0:O 342 133 0.2105 0.1287 0.3308 8.89e-17 8ro1:O
10 7abi:P 237 79 0.1675 0.1477 0.4430 3.59e-16 7aav:P, 7abg:P
11 1sly:A 618 120 0.1244 0.0421 0.2167 0.19
12 6j6g:C 920 74 0.1053 0.0239 0.2973 0.96 7b9v:C, 6bk8:B, 7dco:C, 5gm6:C, 5gmk:C, 6j6h:C, 6j6n:C, 6j6q:C, 3jcm:H, 6teo:A, 6teo:C, 5wsg:C, 5y88:C, 5ylz:C, 5zwm:C, 5zwo:C
13 5lj3:C 882 74 0.1053 0.0249 0.2973 0.99 6exn:C, 5gam:C, 5gan:C, 5lj5:C, 5lqw:B, 5mps:C, 5mq0:C, 5nrl:C
14 7sh1:A 626 31 0.0670 0.0224 0.4516 3.5 7sh1:B
15 8h8j:C 283 28 0.0526 0.0389 0.3929 5.2
16 5dgk:A 519 44 0.0718 0.0289 0.3409 5.8 5dgk:B
17 7jyp:A 305 45 0.0861 0.0590 0.4000 7.7
18 2w41:B 507 82 0.1005 0.0414 0.2561 9.1 2w40:A, 2w40:B, 2w40:C, 2w40:D, 2w41:A
19 4r7x:A 150 81 0.0909 0.1267 0.2346 9.3 4r7x:B
20 2ghf:A 102 48 0.0622 0.1275 0.2708 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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