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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NENGETDDNIETVMTQEQFVKRRRDMLEHINLAMNESSLALEFVSLLLSSVKESTGMSSMSPFLRKVVKPSSLNSDKIPY
VAPTKKEYIELDILNKGWKLQSLNESKDLLRASFNKLSSILQNEHDYWNKIMQSISNKDVIFKIRDRTSGQKLLAIKYGY
EDSGSTYKHDRGIANIRNNIESQNLDLIPHGTDFVHSVKKFLRVRIFTKIESEDDYILSGESVMDRDSESEEAETKDIRK
QIQLLKKIIFEKELMYQIKKECALLISYGVSIENENKVIIELPNEKFEIELLSLDDDSIVNHEQDLPKINDKRANLMLVM
LRLLLVVIFKKTLRSRISSPHGLINLNVDDDILIIRPILGKVRFANYKLLLKKIIKDYVLDIVPGSSITETEVEREQPQE
NKNIDDENITKLNKEIRAFDKLLNIPRRELKINLPLTEHKSPNLSLMLESPNYCNALIHIKFSAGTEANAVSFDVEDFLH
FIVAEYIQQKKV

The query sequence (length=492) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4gwq:B 492 492 1.0000 1.0000 1.0000 0.0 5sva:P
2 7ui9:q 515 502 0.9329 0.8913 0.9143 0.0 4h62:Q, 7uif:q, 7uig:q, 7uio:Aq, 7uio:Bq
3 3j1o:I 318 259 0.3577 0.5535 0.6795 3.49e-87 3rj1:B, 3rj1:I, 3rj1:P
4 3j1o:I 318 157 0.2175 0.3365 0.6815 4.72e-57 3rj1:B, 3rj1:I, 3rj1:P
5 7oop:M 810 92 0.0407 0.0247 0.2174 1.5 7opc:M, 7opd:M
6 1dek:A 241 48 0.0325 0.0664 0.3333 2.7 1dek:B, 1del:A, 1del:B
7 4je5:B 497 41 0.0346 0.0342 0.4146 3.6 4je5:A, 4je5:C, 4je5:D
8 7mq8:LN 671 42 0.0325 0.0238 0.3810 4.8 7mq9:LN, 7mqa:LN
9 6hw2:A 127 54 0.0346 0.1339 0.3148 4.8
10 8q7n:I 184 41 0.0305 0.0815 0.3659 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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