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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NEEVTFFEKAKRYIGNKHLYTEFLKILNLYSQDILDLDDLVEKVDFYLGSNKELFTWFKNFVGYQGPSYKRLPKSDTFMP
CSGRDDMCWEVLNDEWVGHPVWASEDSGFIAHRKNQYEETLFKIEEERHEYDFYIESNLRTIQCLETIVNKIENMTENEK
ANFKLPPGLGHTSMTIYKKVIRKVYDKERGFEIIDALHEHPAVTAPVVLKRLKQKDEEWRRAQREWNKVWRELEQKVFFK
SLDHLGLTFKQADKKLLTTKQLISEISSIKVDQTNKKIHWLTPKPKSQLDFDFPDKNIFYDILCLADTFITHTTAYSNPD
KERLKDLLKYFISLFFSISFEKIEESLYSHKQNVSESNRSIFNLFANTNIYIFFRHWTTIYERLLEIKQMNERVTKEINT
RSTVTFAKDLDLLSSQLSEMGLDFVGEDAYKQVLRLSRRLINGDLEHQWFEESLRQAYNNKAFKLYTIDKVTQSLVKHAH
TLMTDAKTAEIMALFVKDRNASTTSAKDQIIYRLQVRSHMSNTENMFRIEFDKRTLHVSIQYIAL

The query sequence (length=545) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ihn:K 598 594 0.9945 0.9064 0.9125 0.0 8iht:K
2 8hxx:K 549 550 0.9817 0.9745 0.9727 0.0 8hxy:K, 8hy0:K, 8jho:K, 8kd3:B, 8kd4:B, 8kd5:B, 8kd6:B, 8tof:A
3 7yi2:A 506 547 0.9174 0.9881 0.9141 0.0 7yi5:A
4 2n2h:B 125 123 0.1009 0.4400 0.4472 6.70e-31
5 1j49:A 332 74 0.0440 0.0723 0.3243 0.21 1j49:B
6 6yw5:CC 438 82 0.0477 0.0594 0.3171 0.30 6ywe:CC, 6ywx:CC, 6ywy:CC
7 2dld:A 337 72 0.0422 0.0682 0.3194 0.46 2dld:B
8 7ye1:D 1144 89 0.0514 0.0245 0.3146 5.2 7ye2:D
9 5fqg:A 583 84 0.0422 0.0395 0.2738 7.3 5fqh:A, 5fr0:A
10 6sa4:A 109 30 0.0183 0.0917 0.3333 7.9
11 6m0w:A 1032 55 0.0404 0.0213 0.4000 7.9 6m0v:A, 6m0x:A
12 7anc:B 314 78 0.0367 0.0637 0.2564 8.1
13 2gs0:A 115 65 0.0294 0.1391 0.2462 9.0 2l2i:A, 2lox:A, 2m14:A, 2mkr:A, 2n0y:A, 2n23:A
14 6gaw:AI 328 137 0.0587 0.0976 0.2336 9.3 5aj3:I, 5aj4:AI, 6gaz:AI, 7nqh:AI, 7nql:AI, 7nsi:AI, 7nsj:AI, 8oin:Ag, 8oip:Ag, 6ydp:AI, 6ydw:AI
15 8gps:A 228 37 0.0257 0.0614 0.3784 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218