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BioLiP
>protein
NEEINFRKFRIFNGIMGVIHLIQVFLVLYLSNNFSLPITVNKPVYNEITNSISPVAETLFSIEIGPLVAMFLFISATAHI
LIATVLYYRYVQNLKNHMNPYRWFEYSISASFMIVIIAMLTTIYDLGTLLALFTLTAVMNLMGLMMELHNQTTQNTNWTS
YIIGCIAGFVPWIVIFIPLISAESVPDFVIYIFISIAIFFNCFAINMYLQYKKIGKWKNYLHGEKVYIILSLVAKSALAW
QVFAGTLRPM

The query sequence (length=250) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7clj:A 250 250 0.9960 0.9960 0.9960 0.0 6is6:A, 7u55:A
2 6su3:X 256 252 0.4480 0.4375 0.4444 2.46e-60 6su3:A, 6su4:X, 6su4:A, 6uh3:A, 6uh3:B
3 6ly5:a 742 32 0.0520 0.0175 0.4062 1.00 6l4u:A
4 4yf9:C 575 65 0.0840 0.0365 0.3231 1.3 4yf9:F, 4yf9:I, 4yf9:L, 4yfa:C, 4yfa:F, 4yfa:I, 4yfa:L, 4yfb:C, 4yfb:F, 4yfb:I, 4yfb:L
5 5cd4:H 219 78 0.0760 0.0868 0.2436 3.5 5cd4:T, 5h9e:J, 5h9f:J, 4tvx:H, 4tvx:T, 4u7u:K, 4u7u:W
6 4bja:A 182 48 0.0520 0.0714 0.2708 5.1
7 6tu9:A 267 57 0.0560 0.0524 0.2456 5.9 6tu9:B
8 2h6e:A 323 74 0.0720 0.0557 0.2432 6.6
9 9bcb:A 137 27 0.0480 0.0876 0.4444 6.7 6e5w:A, 6e5w:B, 6e5w:C, 6e5w:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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