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BioLiP
>protein
NEEEKIKNDMLKYIEKDPKIGVWSYPAFLVLQYLYHTVPGFKMSRTAKEALEKGLKEMYPTLFTIAEKIAKERFKE

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7dv2:A 76 76 1.0000 1.0000 1.0000 1.88e-51 7dv2:B, 7dv2:C, 7dv2:D
2 6p4f:B 373 52 0.2500 0.0509 0.3654 0.46 6p4f:D
3 7wrr:A 650 43 0.1974 0.0231 0.3488 0.64 7wrr:B, 7wrr:C, 7wrr:D, 7wrt:A, 7wrt:B, 7wrt:C, 7wrt:D
4 8arn:A 509 14 0.1579 0.0236 0.8571 3.3 8are:A, 8arn:B
5 4pht:B 442 22 0.1447 0.0249 0.5000 4.6 1p9r:A, 1p9w:A, 4pht:A, 4pht:C
6 2ogf:B 122 44 0.1842 0.1148 0.3182 5.6 2ogf:A, 2ogf:C, 2ogf:D
7 6alj:A 492 33 0.1842 0.0285 0.4242 5.6 6alj:B, 6alj:C, 6alj:D, 6b5g:A, 6b5g:B, 6b5g:C, 6b5g:D, 6b5h:A, 6b5h:B, 6b5h:C, 6b5h:D, 6b5i:A, 6b5i:B, 6b5i:C, 6b5i:D, 1bi9:A, 1bi9:B, 1bi9:C, 1bi9:D, 4x2q:A, 4x2q:B, 4x2q:C, 4x2q:D
8 4ew2:A 205 32 0.1447 0.0537 0.3438 7.5 4ew3:A, 8fdx:A, 8fdy:A, 8fdz:A, 8fe0:A, 8fjv:A, 8fjw:A, 8fjx:A, 8fjy:A, 5j9f:A, 7jg0:A, 7jg3:A, 7jg4:A, 1men:A, 1men:B, 1men:C, 1njs:A, 1njs:B, 1rbm:A, 1rbm:B, 1rbq:A, 1rbq:B, 1rbq:C, 1rbq:D, 1rby:A, 1rby:B, 1rby:C, 1rby:D, 1rbz:A, 1rbz:B, 1rc0:A, 1rc0:B, 1rc1:A, 1rc1:B, 1zly:A, 4zyt:A, 4zyu:A, 4zyv:A, 4zyw:A, 4zyx:A, 4zyy:A, 4zyz:A, 4zz0:A, 4zz1:A, 4zz2:A, 4zz3:A
9 5m5w:A 1493 43 0.1447 0.0074 0.2558 7.7 4c3i:A, 4ym7:AA, 4ym7:CA, 4ym7:DA, 4ym7:EA, 4ym7:FA
10 4ym7:BA 1462 43 0.1447 0.0075 0.2558 7.8 6hko:A, 6hlq:A, 6hlr:A, 5m5x:A, 5oa1:A, 5w5y:A, 5w64:A, 5w65:A, 5w66:A
11 5g5l:A 1480 43 0.1447 0.0074 0.2558 7.8 6h67:A, 6h68:A, 5m3m:A, 5m5y:A, 5m64:A, 5n5y:A, 5n5z:A, 5n60:A, 6rqt:A, 6rrd:A, 6rui:A, 6ruo:A, 6rwe:A, 6tps:A
12 4cnj:A 391 38 0.1842 0.0358 0.3684 8.1 4cnj:B, 4cnj:C, 4cnj:D, 4cnk:A, 4cnk:B
13 5y5f:A 400 68 0.2500 0.0475 0.2794 8.2 1cl6:A, 1cmj:A, 1cmn:A, 7dvo:A, 7dvo:B, 1ehe:A, 1ehf:A, 1ehg:A, 1f24:A, 1f25:A, 1f26:A, 1ged:A, 1gei:A, 1gej:A, 1jfb:A, 1jfc:A, 1rom:A, 2rom:A, 1ulw:A, 1xqd:A, 5y5g:A, 5y5h:A, 5y5i:A, 5y5i:B, 5y5j:A, 5y5j:B, 5y5k:A, 5y5k:B, 5y5l:A, 5y5l:B, 5y5m:A, 5y5m:B
14 5m3f:A 1459 43 0.1447 0.0075 0.2558 8.2 5n61:A
15 5ogl:A 707 23 0.1316 0.0141 0.4348 8.7 6gxc:A
16 3rce:A 683 23 0.1316 0.0146 0.4348 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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