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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NEEEKIKNDMLKYIEKDPKIGVWSYPAFLVLQYLYHTVPGFKMSRTAKEALEKGLKEMYPTLFTIAEKIAKERFK

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7dv2:A 76 75 1.0000 0.9868 1.0000 7.04e-51 7dv2:B, 7dv2:C, 7dv2:D
2 6p4f:B 373 52 0.2533 0.0509 0.3654 0.40 6p4f:D
3 7wrr:A 650 43 0.2000 0.0231 0.3488 0.61 7wrr:B, 7wrr:C, 7wrr:D, 7wrt:A, 7wrt:B, 7wrt:C, 7wrt:D
4 8arn:A 509 14 0.1600 0.0236 0.8571 3.1 8are:A, 8arn:B
5 4pht:B 442 22 0.1467 0.0249 0.5000 4.0 1p9r:A, 1p9w:A, 4pht:A, 4pht:C
6 6alj:A 492 33 0.1867 0.0285 0.4242 5.2 6alj:B, 6alj:C, 6alj:D, 6b5g:A, 6b5g:B, 6b5g:C, 6b5g:D, 6b5h:A, 6b5h:B, 6b5h:C, 6b5h:D, 6b5i:A, 6b5i:B, 6b5i:C, 6b5i:D, 1bi9:A, 1bi9:B, 1bi9:C, 1bi9:D, 4x2q:A, 4x2q:B, 4x2q:C, 4x2q:D
7 2ogf:B 122 44 0.1867 0.1148 0.3182 5.2 2ogf:A, 2ogf:C, 2ogf:D
8 5m5w:A 1493 43 0.1467 0.0074 0.2558 7.1 4c3i:A, 4ym7:AA, 4ym7:CA, 4ym7:DA, 4ym7:EA, 4ym7:FA
9 4ew2:A 205 32 0.1467 0.0537 0.3438 7.3 4ew3:A, 8fdx:A, 8fdy:A, 8fdz:A, 8fe0:A, 8fjv:A, 8fjw:A, 8fjx:A, 8fjy:A, 5j9f:A, 7jg0:A, 7jg3:A, 7jg4:A, 1men:A, 1men:B, 1men:C, 1njs:A, 1njs:B, 1rbm:A, 1rbm:B, 1rbq:A, 1rbq:B, 1rbq:C, 1rbq:D, 1rby:A, 1rby:B, 1rby:C, 1rby:D, 1rbz:A, 1rbz:B, 1rc0:A, 1rc0:B, 1rc1:A, 1rc1:B, 1zly:A, 4zyt:A, 4zyu:A, 4zyv:A, 4zyw:A, 4zyx:A, 4zyy:A, 4zyz:A, 4zz0:A, 4zz1:A, 4zz2:A, 4zz3:A
10 5m3f:A 1459 43 0.1467 0.0075 0.2558 7.6 5n61:A
11 4ym7:BA 1462 43 0.1467 0.0075 0.2558 7.6 6hko:A, 6hlq:A, 6hlr:A, 5m5x:A, 5oa1:A, 5w5y:A, 5w64:A, 5w65:A, 5w66:A
12 5g5l:A 1480 43 0.1467 0.0074 0.2558 7.6 6h67:A, 6h68:A, 5m3m:A, 5m5y:A, 5m64:A, 5n5y:A, 5n5z:A, 5n60:A, 6rqt:A, 6rrd:A, 6rui:A, 6ruo:A, 6rwe:A, 6tps:A
13 4c3h:A 1523 43 0.1467 0.0072 0.2558 7.7 4c2m:A, 4c2m:P, 4c3j:A
14 3rce:A 683 23 0.1333 0.0146 0.4348 7.8
15 5ogl:A 707 23 0.1333 0.0141 0.4348 7.9 6gxc:A
16 3gc0:A 278 53 0.1733 0.0468 0.2453 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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