Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NDYRTFKLSLLTLAPIHIGNGEKYTSREFIYENKKFYFPDMGKFYNKMVEKRLAEKFEAFLIQTRPNARNNRLISFLNDN
RIAERSFGGYSISETGLESNSAGAINEVNKFIRDAFGNPYIPGSSLKGAIRTILMNTTPKWNNENAVNDFGRFPKENKNL
IPWGPKKGKEYDDLFNAIRVSDSKPFDNKSLILVQKWDYSAKTNKAKPLPLYRESISPLTKIEFEITTTTDEAGRLIEEL
GKRAQAFYKDYKAFFLSEFPDDKIQANLQYPIYLGAGSGAWTKTLFKQADGILQRRYSRMKTKMVKKGVLKLTKAPLKTS
LVKNHESFYEMGKANFMIKEI

The query sequence (length=341) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ifr:H 353 353 1.0000 0.9660 0.9660 0.0 6ifk:H, 6ifl:H, 6ifn:H, 6ifu:H, 6ify:H, 6ifz:H, 6ig0:H
2 8x5d:N 370 371 0.3167 0.2919 0.2911 2.62e-38
3 9ash:J 311 356 0.2991 0.3280 0.2865 7.97e-33 9asi:J, 6xn3:J, 6xn4:J, 6xn5:J, 6xn7:J
4 8do6:H 327 299 0.2669 0.2783 0.3043 7.63e-28 7uzz:E, 7v00:E, 7v01:E, 7v02:E
5 8wfx:N 265 206 0.1965 0.2528 0.3252 4.80e-26
6 6mur:F 377 265 0.1906 0.1724 0.2453 7.44e-09 6iqw:F, 6mus:F, 6mut:F
7 6muu:F 323 252 0.1994 0.2105 0.2698 3.75e-05
8 4qts:C 186 56 0.0733 0.1344 0.4464 3.59e-04 4qts:D
9 6o7e:Y 361 156 0.1261 0.1191 0.2756 0.005 6o7h:F, 6o7i:F
10 6mur:D 287 51 0.0704 0.0836 0.4706 0.035 6iqw:C, 6iqw:D, 6mur:C, 6mus:C, 6mus:D, 6mus:K, 6mut:C, 6mut:D, 6muu:C, 6muu:D, 6o7e:C, 6o7e:D, 6o7h:C, 6o7h:D, 6o7i:C, 6o7i:D, 6o7i:K
11 6ifn:F 220 46 0.0645 0.1000 0.4783 0.053 6ifk:G, 6ifk:F, 6ifk:E, 6ifl:D, 6ifl:E, 6ifl:F, 6ifn:E, 6ifn:G, 6ifr:G, 6ifr:F, 6ifr:E, 6ifu:D, 6ifu:E, 6ifu:F, 6ify:G, 6ify:F, 6ify:E, 6ifz:G, 6ifz:F, 6ifz:E, 6ig0:G, 6ig0:F, 6ig0:E, 6nud:C, 6nud:E, 6nud:N, 6nud:O, 6nud:P, 6nue:C, 6nue:E, 6nue:N, 6nue:O, 6nue:P
12 6s6b:D 285 119 0.0997 0.1193 0.2857 0.057 6s6b:E, 6s6b:F, 6s6b:G, 6s8b:D, 6s8b:E, 6s8b:F, 6s8b:G, 6s8e:D, 6s8e:E, 6s8e:F, 6s8e:G, 6s91:D, 6s91:E, 6s91:F, 6s91:G, 6sh8:D, 6sh8:E, 6sh8:F, 6sh8:G, 6shb:D, 6shb:E, 6shb:F, 6shb:G, 6sic:D, 6sic:E, 6sic:F, 6sic:G
13 8do6:E 205 63 0.0674 0.1122 0.3651 0.18 8do6:G, 8do6:F, 7uzw:A, 7uzw:B, 7uzw:C, 7uzw:D, 7uzx:A, 7uzx:B, 7uzx:C, 7uzx:D, 7uzy:D, 7uzy:C, 7uzy:A, 7uzy:B, 7uzz:D, 7uzz:C, 7uzz:A, 7uzz:B, 7v00:A, 7v00:B, 7v00:C, 7v00:D, 7v01:A, 7v01:B, 7v01:C, 7v02:A, 7v02:B, 7v02:C
14 8x5d:K 235 45 0.0587 0.0851 0.4444 0.19 8wfx:I, 8wfx:J, 8wfx:K, 8wfx:L, 8wfx:G, 8wfx:H, 8x5d:L, 8x5d:J, 8x5d:I, 8x5d:H
15 6s6b:I 284 140 0.1026 0.1232 0.2500 0.34 6s8b:I, 6s8e:I, 6s91:I, 6sh8:I, 6shb:I, 6sic:I
16 4n0l:A 335 27 0.0440 0.0448 0.5556 0.67 4n0l:B
17 8bmw:F 239 25 0.0381 0.0544 0.5200 0.89 8bmw:G
18 2zif:B 243 97 0.0762 0.1070 0.2680 2.2 2zif:A
19 2v9k:A 467 100 0.0704 0.0514 0.2400 3.2
20 8s9u:D 518 66 0.0616 0.0405 0.3182 3.6 8s9t:D, 8s9v:D, 8s9x:D
21 4kgn:A 139 51 0.0469 0.1151 0.3137 4.7
22 9ash:H 214 51 0.0587 0.0935 0.3922 4.7 9ash:F, 9ash:G, 9ash:I, 9asi:F, 9asi:H, 9asi:G, 9asi:I, 6xn3:F, 6xn3:H, 6xn3:G, 6xn3:I, 6xn4:F, 6xn4:H, 6xn4:G, 6xn5:I, 6xn5:F, 6xn5:H, 6xn5:G, 6xn7:F, 6xn7:H, 6xn7:G, 6xn7:I
23 3x1l:H 297 29 0.0323 0.0370 0.3793 5.1
24 6pqr:A 468 46 0.0440 0.0321 0.3261 5.3 6pqn:A, 6pqn:B, 6pqr:D, 6pqu:A, 6pqu:E, 6pqy:A, 6pqy:D
25 6pqx:A 480 34 0.0352 0.0250 0.3529 7.8 6pqx:E, 6pr5:A, 6pr5:E
26 6xqo:I 274 28 0.0323 0.0401 0.3929 9.2

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218