Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NDYCQHFVDTGHRPQNFIRDRELIRLKDELIAKSNTPPMYLQADIEAFDIRELTPKFDVILLEPPLEEYYRKCWTWDDIM
KLEIDEIAAPRSFIFLWCGSGEGLDLGRVCLRKWGYRRCEDICWIKTNKNNPLDPKAVFQRTKEHCLMGIKGTVDIDLII
TEEPEIGNIEKPVEIFHIIEHFCLGRRRLHLFGRDSTIRPGWLTVGPTLTNSNYNAETYASYFSAPNSYLTGCTEE

The query sequence (length=236) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ni7:B 246 244 1.0000 0.9593 0.9672 2.77e-173 7acd:B, 7nhh:B, 7o0q:B, 7oem:B, 8pwa:B
2 5k7u:A 208 187 0.2712 0.3077 0.3422 8.79e-26 7acd:A, 8bn8:AAA, 5il1:A, 5il2:A, 5k7w:A, 5l6d:A, 5l6e:A, 7nhg:A, 7nhh:A, 7nhi:A, 7nhj:A, 7nhv:A, 7ni7:A, 7ni8:A, 7ni9:A, 7nia:A, 7nid:A, 7o08:A, 7o09:A, 7o0l:A, 7o0m:A, 7o0p:A, 7o0q:A, 7o0r:A, 7o27:A, 7o28:A, 7o29:A, 7o2e:A, 7o2f:A, 7o2h:A, 7o2i:A, 7o2x:A, 7oed:A, 7oee:A, 7oef:A, 7oeg:A, 7oeh:A, 7oei:A, 7oej:A, 7oek:A, 7oel:A, 7oem:A, 7oql:A, 7oqo:A, 7oqp:A, 8pw8:A, 8pw9:A, 8pwa:A, 8pwb:A, 5tey:A, 6ttp:A, 6ttt:A, 6ttv:A, 6ttw:A, 6ttx:A, 6tu1:A, 6y4g:A
3 7yi8:B 223 190 0.2288 0.2422 0.2842 6.48e-18 7f4p:A, 7f4q:A, 7f4t:A, 7f4t:E, 7f4t:H, 7f4t:K, 7yi9:B
4 7f4m:D 216 188 0.2161 0.2361 0.2713 1.97e-14 7f4l:C, 7f4m:C, 7f4n:C, 7f4n:D
5 6yxk:B 218 61 0.0932 0.1009 0.3607 0.28
6 3jtm:A 351 35 0.0593 0.0399 0.4000 6.0 3n7u:A, 3n7u:B, 3n7u:C, 3n7u:D, 3n7u:E, 3n7u:F, 3n7u:G, 3n7u:H, 3n7u:I, 3n7u:J, 3n7u:K, 3n7u:L
7 2zjf:A 346 99 0.1017 0.0694 0.2424 7.2
8 3u9g:A 217 136 0.1356 0.1475 0.2353 7.6 6l1w:A
9 8k32:C 333 68 0.0932 0.0661 0.3235 8.5 8k32:A, 8k32:B, 8k32:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218