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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NDSPFYVNPNMSSAEWVRNNPNDPRTPVIRDRIASVPQGTWFAHHNPGQITGQVDALMSAAQAAGKIPILVVSNAPGRDC
GAPSHSAYRSWIDEFAAGLKNRPAYIIVEPDLISLMSSCMQHVQQEVLETMAYAGKALKAGSSQARIYFDAGHSAWHSPA
QMASWLQQADISNSAHGIATNTSNYRWTADEVAYAKAVLSAIGNPSLRAVIDTSRNGNGPAGNEWCDPSGRAIGTPSTTN
TGDPMIDAFLWIKLPGEADGCIAGAGQFVPQAAYEMAIAA

The query sequence (length=280) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2bog:X 280 280 1.0000 1.0000 1.0000 0.0 2bod:X, 2bof:X
2 1uoz:A 300 288 0.4214 0.3933 0.4097 7.36e-54 1up0:A, 1up2:A, 1up3:A
3 6idw:A 322 253 0.2500 0.2174 0.2767 1.93e-21 6idw:B, 6idw:C, 6idw:D
4 4a05:A 360 262 0.2679 0.2083 0.2863 1.86e-18
5 1oc5:A 364 239 0.2393 0.1841 0.2803 1.02e-15 1bvw:A, 2bvw:A, 2bvw:B, 1gz1:A, 1oc7:A, 1ocb:A, 1ocb:B, 1ocj:A, 1ocn:A
6 5xcz:A 358 309 0.2857 0.2235 0.2589 1.70e-15
7 3vog:A 362 288 0.2714 0.2099 0.2639 2.97e-14 3voh:A, 3voi:A
8 4au0:A 363 285 0.2607 0.2011 0.2561 1.05e-13 4au0:B, 4ax6:A, 4ax6:B, 4ax7:A, 4ax7:B, 4ax7:C, 4ax7:D, 1cb2:A, 1cb2:B, 1hgw:A, 1hgw:B, 1hgy:A, 1hgy:B, 1qjw:A, 1qjw:B, 1qk0:A, 1qk0:B, 1qk2:A, 1qk2:B
9 3a9b:A 374 244 0.2250 0.1684 0.2582 8.07e-10 3abx:A, 3vof:A
10 6k52:A 428 368 0.3357 0.2196 0.2554 2.89e-09 6k54:A, 6k54:B, 6k54:C, 6k55:A, 6k55:B, 6k55:C
11 4avn:A 420 365 0.3250 0.2167 0.2493 1.20e-07 4avo:A, 4b4f:A, 4b4f:B
12 4fju:A 338 102 0.1000 0.0828 0.2745 0.67 4fju:B, 4h8a:A, 4h8a:B
13 2mak:A 82 54 0.0571 0.1951 0.2963 1.2 2mak:C
14 1x54:A 434 95 0.0929 0.0599 0.2737 1.7 1x55:A
15 5ue7:A 251 56 0.0607 0.0677 0.3036 2.3 5ue7:B
16 5awz:A 235 31 0.0464 0.0553 0.4194 2.6 5ax0:A, 5ax1:A
17 4rh7:A 3005 29 0.0321 0.0030 0.3103 9.4
18 6sc2:B 3930 29 0.0321 0.0023 0.3103 9.4 6rla:A, 6rla:B, 6sc2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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