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BioLiP
>protein
NDSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLD
EVSEQATQLGAVNTVVIDATGHTTGHNTDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT
SRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKAA
RALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETFLSL

The query sequence (length=282) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3jyo:A 282 282 1.0000 1.0000 1.0000 0.0 3jyp:A, 3jyq:A
2 2hk9:A 269 270 0.3121 0.3271 0.3259 4.88e-38 2hk9:B, 2hk9:C, 2hk9:D
3 1nvt:A 287 282 0.3369 0.3310 0.3369 1.86e-36 1nvt:B
4 3doo:A 258 274 0.2766 0.3023 0.2847 1.22e-29
5 3toz:A 291 283 0.2979 0.2887 0.2968 2.76e-25 3tnl:A, 3tnl:B, 3tnl:C, 3tnl:D, 3toz:B, 3toz:C, 3toz:D, 3toz:E, 3toz:F, 3toz:G, 3toz:H
6 4k28:A 266 217 0.2695 0.2857 0.3502 1.18e-24 4k28:B
7 1npd:B 288 217 0.2411 0.2361 0.3134 6.39e-22 1npd:A, 1o9b:A, 1o9b:B, 3t4e:A, 3t4e:B, 1vi2:A, 1vi2:B
8 7col:A 280 281 0.3298 0.3321 0.3310 1.04e-21 7col:B
9 2ev9:B 263 272 0.3014 0.3232 0.3125 6.40e-20 2cy0:A, 2d5c:A, 2d5c:B, 2ev9:A
10 2o7q:A 501 271 0.3121 0.1756 0.3247 4.08e-18 6bmb:A, 6bmq:A, 2gpt:A, 2o7s:A
11 3pgj:A 272 219 0.2092 0.2169 0.2694 1.42e-13 3pgj:B, 3pgj:C, 3pgj:D, 3sef:A, 3sef:B
12 6hqv:A 1555 292 0.2730 0.0495 0.2637 5.40e-13 6hqv:B
13 1nyt:A 271 270 0.2553 0.2657 0.2667 1.40e-12 1nyt:B, 1nyt:C, 1nyt:D
14 4fos:A 263 283 0.2624 0.2814 0.2615 4.48e-12 4fq8:A, 4fq8:B, 4fr5:A, 4fr5:B, 4fsh:A, 3phh:A, 3phi:A, 3phi:B, 3phj:A, 3phj:B
15 4p4g:A 265 268 0.2589 0.2755 0.2724 9.17e-11 4p4l:A, 4p4l:B, 4p4l:C
16 3sef:C 244 218 0.1986 0.2295 0.2569 1.05e-09
17 7tbv:A 682 281 0.2340 0.0968 0.2349 5.74e-08 7tbv:B, 7tbv:C, 7tbv:D
18 1p77:A 265 225 0.2199 0.2340 0.2756 9.45e-08
19 1gpj:A 399 80 0.1064 0.0752 0.3750 0.26
20 4xr9:A 456 56 0.0816 0.0504 0.4107 0.46
21 3pqd:B 312 46 0.0496 0.0449 0.3043 0.57 3pqd:A, 3pqd:C, 3pqd:D, 3pqd:F, 3pqd:H, 3pqd:E, 3pqd:G, 3pqf:C, 3pqf:D
22 3t07:A 583 151 0.1241 0.0600 0.2318 0.62 3t07:B, 3t07:C, 3t07:D, 3t0t:A, 3t0t:B, 3t0t:C, 3t0t:D
23 6cwy:D 487 71 0.0745 0.0431 0.2958 0.73
24 2e37:C 310 43 0.0745 0.0677 0.4884 0.74 2e37:A, 2e37:E, 2e37:G, 2v7p:A, 2v7p:B, 2v7p:C, 2v7p:D, 3vph:A, 3vph:D, 3vph:B, 3vph:C, 2xxb:A, 2xxb:B, 2xxj:B, 2xxj:D, 3zzn:A, 3zzn:D
25 5wvp:A 924 51 0.0603 0.0184 0.3333 0.77
26 5dx5:A 399 95 0.0887 0.0627 0.2632 0.83 5dx5:B
27 4ln1:B 321 99 0.0922 0.0810 0.2626 1.1 4ln1:A, 4ln1:C, 4ln1:D
28 1mfz:A 436 51 0.0816 0.0528 0.4510 1.2 1mfz:B, 1mfz:C, 1mfz:D, 1muu:C, 1muu:A, 1muu:B, 1muu:D, 1mv8:B, 1mv8:A, 1mv8:C, 1mv8:D
29 3wsw:A 316 41 0.0567 0.0506 0.3902 1.3 3wsw:B, 3wsw:C, 3wsw:D
30 7wbc:A 250 56 0.0745 0.0840 0.3750 1.4 7wbc:B
31 4qys:B 418 36 0.0461 0.0311 0.3611 1.8 6hte:B, 6hte:D, 4qys:A
32 3h5a:C 358 43 0.0603 0.0475 0.3953 1.9 3h5a:A, 3h5a:B, 3h5a:D, 3h5n:A, 3h5n:B, 3h5n:C, 3h5n:D, 3h5r:A, 3h5r:B, 3h5r:C, 3h5r:D, 3h9g:A, 3h9g:B, 3h9g:C, 3h9g:D, 3h9j:A, 3h9j:B, 3h9j:C, 3h9j:D, 3h9q:A, 3h9q:B, 3h9q:C, 3h9q:D, 6om4:A, 6om4:B
33 6yub:A 423 75 0.0851 0.0567 0.3200 1.9 6yub:B, 6yuc:D, 6z6s:DDD
34 1vpo:L 219 77 0.0780 0.1005 0.2857 2.3
35 4cnz:A 100 66 0.0745 0.2100 0.3182 3.3 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
36 1llc:A 320 84 0.0780 0.0688 0.2619 3.7 6j9t:B, 6j9t:D, 6j9t:E, 6j9t:C, 6j9t:F, 6j9u:A, 6j9u:C, 6j9u:D
37 3ftf:A 246 54 0.0674 0.0772 0.3519 3.7 3fte:A, 3r9x:B
38 4gsk:B 572 42 0.0567 0.0280 0.3810 4.5 4gsk:A
39 4gsl:A 598 42 0.0567 0.0268 0.3810 4.7 4gsl:B, 3rui:A, 3t7e:A, 3t7g:B, 3t7g:A, 3vh1:A, 3vh2:A, 3vh3:A, 3vh4:A, 5yec:A, 5yec:C
40 3ii0:C 407 108 0.1064 0.0737 0.2778 4.7 6dna:A, 6dna:B, 6dna:C, 6dna:D, 6dna:E, 6dna:F, 3ii0:A, 3ii0:B, 3ii0:D
41 1jw9:B 240 72 0.0780 0.0917 0.3056 5.2 1jwa:B, 1jwb:B
42 6f9q:C 260 45 0.0461 0.0500 0.2889 5.2 6f9q:A, 6f9q:B, 6f9q:D
43 5d08:A 384 85 0.0780 0.0573 0.2588 6.9 5d08:B, 5d0a:A, 5d0a:B, 5d0a:C, 5d0a:D, 5d0b:A, 5d0b:B, 5t8y:B, 5t8y:A
44 3pvz:A 372 69 0.0745 0.0565 0.3043 6.9 3pvz:C, 3pvz:D
45 3es7:A 387 38 0.0496 0.0362 0.3684 7.1 3es7:B, 3es8:A, 3es8:B, 3es8:C, 3es8:D, 3es8:E, 3es8:F, 3es8:G, 3es8:H, 3fyy:A, 3fyy:B, 3hpf:A, 3hpf:B, 2oqy:A, 2oqy:B, 2oqy:C, 2oqy:D, 2oqy:E, 2oqy:F, 2oqy:G, 2oqy:H
46 6pbm:A 426 129 0.1206 0.0798 0.2636 7.3 6c4n:A, 6c4n:B, 6pbm:B, 6pbn:A, 6pbn:B, 6pbp:A, 6pbp:B, 6pbt:A, 6pbt:B
47 6lkx:A 441 31 0.0461 0.0295 0.4194 7.4 6jdr:A, 6jds:A, 6jdu:A, 6lkx:B
48 1a5z:A 312 86 0.0957 0.0865 0.3140 7.7
49 8deb:A 397 71 0.0816 0.0579 0.3239 8.0 8deb:B
50 3pvz:B 300 43 0.0496 0.0467 0.3256 8.2
51 1hyh:A 297 76 0.0922 0.0875 0.3421 9.2 1hyh:B, 1hyh:C, 1hyh:D
52 3n71:A 468 96 0.1064 0.0641 0.3125 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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