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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NDRITLPPANAQRTNMTCHFCIVGCGYHVYKWPELEEGGRAPEQNALGLDFRKQLPPLAVTLTPAMTNVVTEHDGARYDI
MVVPDKACVVNSGLSSTRGGKMASYMYTPTGDGKERLSAPRLYAADEWVDTTWDHAMALYAGLIKKTLDKDGPQGVFFSC
FDHGGAGGGFENTWGTGKLMFSAIQTPMVRIHNRPAYNSECHATREMGIGELNNAYEDAQLADVIWSIGNNPYESQTNYF
LNHWLPNLQGATTSKKKERFPNENFPQARIIFVDPRETPSVAIARHVAGNDRVLHLAIEPGTDTALFNGLFTYVVEQGWI
DKPFIEAHTKGFDDAVKTNRLSLDECSNITGVPVDMLKRAAEWSYKPKASGQAPRTMHAYEKGIIWGNDNYVIQSALLDL
VIATHNVGRRGTGCVRMGGHQEGYTRPPYPGDKKIYIDQELIKGKGRIMTWWGCNNFQTSNNAQALREAILQRSAIVKQA
MQKARGATTEEMVDVIYEATQNGGLFVTSINLYPTKLAEAAHLMLPAAHPGEMNLTSMNGERRIRLSEKFMDPPGTAMAD
CLIAARIANALRDMYQKDGKAEMAAQFEGFDWKTEEDAFNDGFRRAGQPGAPAIDSQGGSTGHLVTYDRLRKSGNNGVQL
PVVSWDESKGLVGTEMLYTEGKFDTDDGKAHFKPAPWNGLPATVQQQKDKYRFWLNNGRNNEVWQTAYHDQYNSLMQERY
PMAYIEMNPDDCKQLDVTGGDIVEVYNDFGSTFAMVYPVAEIKRGQTFMLFGYVNGIQGDVTTDWTDRDIIPYYKGTWGD
IRKVGSMSEFKRTVSFKSRRFG

The query sequence (length=822) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8cff:A 823 821 0.9878 0.9866 0.9890 0.0 8cff:C, 8cff:E, 8cff:G, 8cgs:A, 8cgs:C, 8cgs:E, 8cgs:G, 8ch9:A, 8ch9:C, 8ch9:E, 8ch9:G, 1g8j:A, 1g8j:C, 1g8k:A, 1g8k:C, 1g8k:E, 1g8k:G
2 4aay:A 843 849 0.4939 0.4816 0.4782 0.0 4aay:C, 4aay:E, 4aay:G, 8ccq:A, 8ccq:C, 8ccq:E, 8ccq:G, 8ed4:A, 8ed4:C, 8ed4:E, 8ed4:G, 5nqd:A, 5nqd:C, 5nqd:E, 5nqd:G
3 7bkb:D 549 604 0.1873 0.2805 0.2550 7.91e-29 7bkb:d, 7bkc:D, 7bkc:d, 7bkd:D, 7bke:D
4 7vw6:A 913 709 0.1946 0.1752 0.2257 3.14e-23 7e5z:A, 8j83:A, 7xqw:A
5 7qv7:S 571 501 0.1509 0.2172 0.2475 1.62e-21 7qv7:Y
6 2v45:A 723 705 0.1934 0.2199 0.2255 4.97e-17 2jim:A, 2jio:A, 2jip:A, 2jiq:A, 2jir:A, 2nap:A, 2v3v:A
7 2nya:A 791 799 0.2129 0.2212 0.2190 2.02e-15 2nya:F
8 1fdi:A 715 671 0.1691 0.1944 0.2072 5.74e-13 1aa6:A, 1fdo:A, 2iv2:X, 7z0t:A
9 3ml1:A 799 777 0.2056 0.2115 0.2175 1.44e-12 3o5a:A
10 6tg9:A 949 755 0.2032 0.1760 0.2212 1.58e-10 6tg9:E, 6tga:A, 6tga:E
11 1ogy:A 789 772 0.1910 0.1990 0.2034 3.93e-10 1ogy:C, 1ogy:E, 1ogy:G, 1ogy:I, 1ogy:K, 1ogy:M, 1ogy:O
12 2vpw:A 734 305 0.0852 0.0954 0.2295 1.52e-06 2vpw:E, 2vpx:A, 2vpx:E, 2vpy:A, 2vpy:E, 2vpz:A, 2vpz:E
13 1kqf:A 982 333 0.0888 0.0743 0.2192 6.45e-06 1kqg:A
14 1kqf:A 982 55 0.0231 0.0193 0.3455 4.2 1kqg:A
15 7l5s:A 771 264 0.0730 0.0778 0.2273 8.48e-06 7l5i:A
16 2e7z:A 727 238 0.0657 0.0743 0.2269 1.84e-05
17 5t5i:D 130 107 0.0365 0.2308 0.2804 0.002 5t5i:L, 5t5m:D, 5t61:D, 5t61:J, 5t61:P, 5t61:V, 5t61:b, 5t61:h, 5t61:n, 5t61:t
18 8cm5:A 974 331 0.0900 0.0760 0.2236 0.002 8bqg:A, 8bqh:A, 8bqi:A, 8bqj:A, 8bqk:A, 8bql:A, 8cm4:A, 8cm4:C, 8cm5:C, 8cm5:K, 8cm5:R, 8cm6:A, 8cm6:C, 8cm7:A, 8rc8:A, 8rc9:A, 8rca:A, 8rcb:A, 8rcc:A, 8rcg:A, 6sdr:A, 6sdv:A, 7z5o:AAA
19 6cz7:A 814 283 0.0827 0.0835 0.2403 0.002 6cz7:C, 6cz8:C, 6cz8:A, 6cz9:A, 6cz9:C, 6cza:A, 6cza:C
20 1h0h:A 977 227 0.0681 0.0573 0.2467 0.002 1h0h:K
21 1dmr:A 779 286 0.0766 0.0809 0.2203 0.003 1dms:A, 2dmr:A, 3dmr:A, 4dmr:A, 1e18:A, 1e5v:A, 1e5v:C, 1e60:A, 1e60:C, 1e61:A, 1e61:C, 1h5n:A, 1h5n:C
22 1dmr:A 779 109 0.0341 0.0359 0.2569 1.5 1dms:A, 2dmr:A, 3dmr:A, 4dmr:A, 1e18:A, 1e5v:A, 1e5v:C, 1e60:A, 1e60:C, 1e61:A, 1e61:C, 1h5n:A, 1h5n:C
23 1tmo:A 794 278 0.0803 0.0831 0.2374 0.11
24 1tmo:A 794 120 0.0377 0.0390 0.2583 9.3
25 7awt:G 907 105 0.0401 0.0364 0.3143 0.19 7nyr:G, 7nyu:G, 7nyv:G, 7nz1:G, 7p61:G, 7p62:G, 7p63:G, 7p64:G, 7p69:G, 7p7c:G, 7p7e:G, 7p7j:G, 7p7k:G, 7p7l:G, 7p7m:G, 7z7r:G, 7z7s:G, 7z7t:G, 7z7v:G, 7z80:G, 7z83:G, 7z84:G, 7zc5:G, 7zci:G
26 2ivf:A 912 205 0.0511 0.0461 0.2049 0.19
27 2ivf:A 912 67 0.0207 0.0186 0.2537 0.82
28 5xmz:A 122 72 0.0268 0.1803 0.3056 0.32
29 8oh5:C 1172 117 0.0353 0.0247 0.2479 0.62 8oh5:F, 8oh5:I, 8oh5:L, 8oh9:C, 8oh9:F, 8oh9:I, 8oh9:L
30 5chc:A 895 81 0.0292 0.0268 0.2963 0.67 5ch7:A, 5ch7:C, 5ch7:E, 5chc:C, 5chc:E, 5e7o:A, 5e7o:C, 5e7o:E, 5e7o:G, 5e7o:I, 5e7o:K, 4ydd:A, 4ydd:C, 4ydd:E
31 7t30:A 666 78 0.0231 0.0285 0.2436 0.71 7t2r:A, 7t2r:F, 7t30:F
32 7b04:B 1120 74 0.0231 0.0170 0.2568 3.0 7b04:E, 7b04:H, 7b04:K, 7b04:N, 7b04:Q, 7b04:T, 7b04:W
33 1eu1:A 767 229 0.0693 0.0743 0.2489 3.7
34 7msw:A 635 91 0.0280 0.0362 0.2527 4.3 7exm:A, 7exm:B, 7exm:C, 7exm:D, 7msx:A
35 7pw4:C 310 101 0.0316 0.0839 0.2574 5.1 6l54:C, 7pw5:C, 7pw7:C, 7pw8:C, 7pw9:C, 6syt:C, 6z3r:C
36 5l7j:A 406 37 0.0146 0.0296 0.3243 5.2 6ia6:A, 5l7l:A
37 5mtz:A 768 110 0.0341 0.0365 0.2545 6.6 5mtz:B
38 5egh:B 393 64 0.0207 0.0433 0.2656 6.7 5ege:A, 5ege:B, 5ege:C, 5ege:D, 5egh:A
39 7b0n:G 694 44 0.0170 0.0202 0.3182 6.9 6gcs:A, 7o6y:A, 7o71:A, 6rfq:A, 6rfr:A, 6rfs:A, 6y79:A, 6yj4:G
40 6fwv:A 522 54 0.0219 0.0345 0.3333 8.9 6fwv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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