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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NDPYTDPETGVMYNLLGIKDQARLERVESAFAYIRSFELGRTSISGKFDLDHMKKIHKKLFGDVYEWAGKTRLVDIVKDN
SKFAHYTQIESYAPQITQQLAREQHLRGLDANEFSQRAGYYMGELNALHPFREGNGRTLREFIWQLAREAGYHIDWDRVE
RQEMTRASIESYYGNSDLMSALIRRNLTEFTVNRRVDVS

The query sequence (length=199) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3zc7:A 199 199 1.0000 1.0000 1.0000 1.63e-150 3zcb:A
2 4n67:A 214 194 0.3317 0.3084 0.3402 7.34e-22
3 2jk8:A 291 193 0.3166 0.2165 0.3264 5.29e-21 5nh2:A
4 4wgj:A 210 191 0.2864 0.2714 0.2984 2.95e-20
5 8idw:B 186 166 0.2513 0.2688 0.3012 7.80e-16 8idw:A, 8idw:C, 8idw:D
6 6ep2:K 204 166 0.2663 0.2598 0.3193 3.05e-13 6ep0:A, 6ep0:B, 6ep2:A, 6ep2:B, 6ep2:C, 6ep2:D, 6ep2:E, 6ep2:F, 6ep2:G, 6ep2:H, 6ep2:I, 6ep2:J, 6ep2:L, 6ep5:A, 6ep5:B, 6ep5:C, 6ep5:D, 6ep5:E, 6ep5:F
7 2f6s:A 180 142 0.2261 0.2500 0.3169 1.47e-10 2f6s:B
8 3s6a:A 178 151 0.2211 0.2472 0.2914 1.20e-09 3se5:A, 3se5:B, 3se5:C, 3se5:D, 3sn9:A, 3sn9:B, 3sn9:C, 3sn9:D, 3sn9:E, 3sn9:F, 3sn9:G, 3sn9:H, 3sn9:I, 3sn9:J, 3sn9:K, 3sn9:L, 3sn9:M, 3sn9:N, 3sn9:O, 3sn9:P, 3zlm:A
9 7b7z:A 340 143 0.1910 0.1118 0.2657 2.93e-04 7b80:A, 6i7g:A, 6i7g:B, 6i7i:A, 6i7k:A, 6i7l:A, 4u07:A, 4u07:B, 4u0s:A, 4u0s:B, 4u0u:A, 4u0u:B, 4u0z:A, 4u0z:B, 4u0z:C, 4u0z:D, 4u0z:E, 4u0z:F, 4u0z:G, 4u0z:H, 6zmd:B
10 2v8k:A 543 97 0.1508 0.0552 0.3093 1.1 6ojk:A, 6ojl:A, 2v8j:A
11 4itr:A 299 28 0.0653 0.0435 0.4643 1.2 4itr:B, 3n3u:A, 6siu:B, 6siu:A
12 2h1n:A 566 58 0.0905 0.0318 0.3103 1.5 2h1j:A, 2h1j:B, 2h1n:B
13 8h62:A 462 71 0.0955 0.0411 0.2676 2.6 1o6t:A
14 7cb8:A 394 35 0.0603 0.0305 0.3429 2.8 7cb8:B
15 6qpw:C 377 81 0.1156 0.0610 0.2840 3.2
16 3v7d:B 450 68 0.0905 0.0400 0.2647 4.0 3mks:D, 1nex:B, 1nex:D
17 7rhp:A 215 31 0.0503 0.0465 0.3226 4.0
18 2npm:A 237 87 0.1256 0.1055 0.2874 4.0 2npm:B
19 6m5u:A 585 66 0.0955 0.0325 0.2879 5.7 4iox:C, 6m5v:A
20 4x2d:A 227 60 0.0854 0.0749 0.2833 5.8
21 6yxx:ED 598 43 0.0804 0.0268 0.3721 5.8 7aoi:XC, 6yxy:ED
22 1itq:A 369 46 0.0854 0.0461 0.3696 6.1 1itq:B, 1itu:A, 1itu:B
23 3zec:B 371 17 0.0503 0.0270 0.5882 6.9 3zcn:A, 3zcn:B, 3zec:A
24 7rzy:1 311 41 0.0804 0.0514 0.3902 6.9 7rzy:2, 7rzy:7, 7rzy:3, 7rzy:4, 7rzy:5, 7rzy:6, 7ufi:1, 7ufi:7, 7ufi:2, 7ufi:3, 7ufi:4, 7ufi:5, 7ufi:6, 7ufm:D, 7ufm:I, 7ufm:A, 7ufm:B, 7ufm:C, 7ufm:E, 7ufm:F, 7ufm:G, 7ufm:H, 7ufm:J, 7ufm:K, 7ufm:L, 7ufm:M, 7ufm:N
25 4dx0:A 229 70 0.0955 0.0830 0.2714 7.4
26 4ihc:B 395 51 0.0905 0.0456 0.3529 8.1 4ihc:C, 4ihc:D, 4ihc:E, 4ihc:F, 4ihc:H
27 6orr:C 273 49 0.0804 0.0586 0.3265 9.0 7bkg:A, 7bkg:B, 7bkg:C, 7bkg:D, 7ble:A, 7ble:B, 7ble:C, 7ble:D, 6chh:A, 6chh:B, 6chh:C, 6chh:D, 7egu:A, 7ehz:A, 7ei2:A, 7et7:A, 7et7:B, 7et7:C, 7et7:D, 7eu5:A, 7eu5:B, 7eu5:C, 7eu5:D, 2iip:A, 2iip:B, 2iip:C, 2iip:D, 7nbj:A, 7nbj:B, 7nbj:C, 7nbj:D, 7nbm:A, 7nbm:B, 7nbm:C, 7nbm:D, 7nbq:A, 7nbq:B, 7nbq:C, 7nbq:D, 6orr:A, 6orr:B, 6orr:D, 6pve:A, 6pve:B, 6pve:C, 6pve:D, 6pvs:A, 6pvs:B, 6pvs:C, 6pvs:D, 7rkk:A, 7rkk:B, 7rkl:A, 7rkl:B, 7rkl:C, 7rkl:D, 3rod:A, 3rod:B, 3rod:C, 3rod:D, 7sok:C, 7sok:A, 7sok:B, 7sok:D, 7wmc:A, 7wmc:B, 7wmt:A, 5xvq:A, 5xvq:B, 5yjf:A, 5yjf:B, 5yjf:C, 5yjf:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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