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BioLiP
>protein
NDNYIYSTEVGGVGGTPFTFMQESGTITSIKFNWSDQYKLLHHIEVKFINNANIYATGDPKGNHEVILEIDDDETIIGSV
IGYKKGNDGRCTGVKLTTSKGKSIMAGYFEESLITTYTGKLAGIKGGAGSDIDRLGLIFLK

The query sequence (length=141) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7w62:E 141 141 1.0000 1.0000 1.0000 1.86e-100 7bsm:D, 7bsm:F, 7bsm:G, 7bsm:J, 7bsm:K, 7bsm:L, 7bsm:M, 7bsm:N, 7bsm:H, 7bsm:I, 7bsn:A, 7bsn:B, 7bsn:C, 7bsn:E, 7bsn:F, 7bsn:H, 7bsn:I, 7bsn:J, 7bsn:K, 7bsn:N, 7bsn:D, 7bsn:G, 7bsn:L, 7bsn:M, 7bt8:B, 7bt8:D, 7bt8:E, 7bt9:B, 7bt9:G, 7bt9:A, 7bt9:D, 7bt9:E, 7bt9:F, 7bt9:C, 7bt9:H, 7bt9:I, 7bt9:J, 7bt9:K, 7bt9:L, 7bt9:M, 7bt9:N, 7btl:B, 7btl:A, 7btl:E, 7btl:F, 7btl:C, 7btl:G, 7btl:D, 7ded:B, 7ded:C, 7ded:F, 7ded:E, 7w62:B, 7w62:J, 7w62:G, 7w62:A, 7w62:D, 7w62:F, 7w62:C, 7w62:H, 7w62:I, 7w62:K, 7w62:L, 7w62:M, 7w62:N
2 4zno:A 318 137 0.2553 0.1132 0.2628 0.011 4zno:B, 4znq:A, 4znq:B, 4znr:A, 4znr:B
3 7esi:A 532 26 0.0922 0.0244 0.5000 1.4 7vlz:A
4 1qcf:A 450 55 0.1064 0.0333 0.2727 4.0 1ad5:B, 1ad5:A, 2c0i:A, 2c0i:B, 2c0o:A, 2c0o:B, 2c0t:A, 2c0t:B, 5h09:A, 5h0b:A, 5h0e:A, 5h0g:A, 5h0h:A, 2hck:B, 2hck:A, 2hk5:A, 3vry:A, 3vry:B, 3vrz:A, 3vrz:B, 3vs0:A, 3vs0:B, 3vs1:B, 3vs2:A, 3vs2:B, 3vs3:A, 3vs3:B, 3vs4:B, 3vs4:A, 3vs5:A, 3vs5:B, 3vs6:A, 3vs6:B, 3vs7:A, 5zj6:A, 5zj6:B
5 8ugq:B 215 43 0.0922 0.0605 0.3023 5.1 8ugq:A, 8ugq:C, 8ugq:D, 8ugq:E, 8ugq:F, 8ugq:G, 8ugq:H, 8ugq:I, 8ugq:J, 8ugq:K, 8uh4:A, 8uh4:B, 8uh4:C, 8uh4:D, 8uh4:E, 8uh4:F, 8uh4:R, 8uh4:G, 8uh4:H, 8uh4:Z, 8uh4:I, 8uh4:J, 8uh4:K, 8uh4:7, 8uh4:L, 8uh4:M, 8uh4:c, 8uh4:N, 8uh4:O, 8uh4:d, 8uh4:P, 8uh4:Q, 8uh4:V, 8uh4:S, 8uh4:T, 8uh4:i, 8uh4:U, 8uh4:W, 8uh4:X, 8uh4:f, 8uh4:Y, 8uh4:a, 8uh4:b, 8uh4:s, 8uh4:e, 8uh4:z, 8uh4:g, 8uh4:k, 8uh4:h, 8uh4:j, 8uh4:l, 8uh4:w, 8uh4:n, 8uh4:m, 8uh4:r, 8uh4:o, 8uh4:p, 8uh4:6, 8uh4:q, 8uh4:x, 8uh4:t, 8uh4:y, 8uh4:u, 8uh4:5, 8uh4:v, 8uh4:1, 8uh4:4, 8uh4:2, 8uh4:3, 8uh4:8
6 2odj:B 388 34 0.0993 0.0361 0.4118 5.8 4foz:A, 2odj:A, 3sy7:A
7 6rjm:B 456 47 0.1064 0.0329 0.3191 8.3 6rjm:A, 6rjo:A, 6rjo:B, 6rk2:A, 6rk2:B
8 4q1v:A 707 39 0.0922 0.0184 0.3333 8.5 4q1v:B
9 5x6c:A 539 103 0.1773 0.0464 0.2427 9.7 5x6c:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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