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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NDKVYENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINK
MKLAQQYVMTSLQQEYKKQMLTAAHALAVDAKNLLDVIDQARLKMLGQRPH

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ow8:C 142 127 0.9695 0.8944 1.0000 1.56e-88 3b71:A, 3b71:B, 3b71:C, 6bz3:A, 6bz3:C, 1ow6:A, 1ow6:C, 1ow7:A, 1ow7:B, 1ow7:C, 1ow8:A, 6pw8:A, 7w9u:A, 7w9u:C, 7w9u:D
2 4xev:A 148 123 0.5573 0.4932 0.5935 1.29e-46 3gm1:A, 3gm1:B, 4r32:A, 3u3f:A, 3u3f:B, 3u3f:C, 3u3f:D, 4xef:A, 4xef:D, 4xek:A, 4xev:D
3 1l5y:B 151 64 0.1221 0.1060 0.2500 1.6 1l5y:A
4 7dhw:A 726 35 0.0916 0.0165 0.3429 1.8
5 6hn0:A 583 46 0.1374 0.0309 0.3913 2.1 6hn1:A, 4jk4:A, 4jk4:B, 8kfo:B, 4luf:A, 4luh:A, 4or0:A, 4or0:B, 5orf:A, 5orf:B, 5orf:C, 5orf:D, 5osw:A, 5otb:A, 5otb:B, 5otb:C, 5otb:D, 6qs9:A, 6qs9:B, 6rjv:A, 6rjv:B, 3v03:A, 3v03:B, 8wdd:A, 8wdd:B
6 4hjf:A 263 35 0.0840 0.0418 0.3143 2.8 3u2e:A, 3u2e:B
7 7oik:A 4426 70 0.1527 0.0045 0.2857 5.4 7oim:A, 6tax:A, 6tay:A
8 8k5o:C 346 83 0.1298 0.0491 0.2048 5.4
9 1kc7:A 872 43 0.1145 0.0172 0.3488 5.8
10 8bsg:A 584 37 0.1221 0.0274 0.4324 5.9 6ock:A, 6ocl:A, 4po0:A
11 6yxx:AN 193 52 0.1069 0.0725 0.2692 6.7 7aoi:AN, 6hiv:AN, 6hix:AN, 6yxy:AN
12 6gwi:B 450 27 0.1069 0.0311 0.5185 6.7 6gwi:A
13 4rnh:A 423 14 0.0534 0.0165 0.5000 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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