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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NDIKQLLWNGELNVLVSIDPSFLMKGSPREIAVLRIRVPRETYLVNYMPLIWNKIKSFLSFDPLTDSEKYFWFEHNKTPI
PWNYPVGVLFDCLADVLTFLRIHLVMGDSLPPTIIPIAKTQAEKFWFHQWKQVCFILNGSSKAIMSLSVNEARKFWGSVI
TRNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQPTISMTGVNPTLKDIEGDILDVKEDVMVICQGIEIPWHMLL
YDLYSKLRSFDGFLYITLVPI

The query sequence (length=261) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2dym:G 262 274 0.9425 0.9389 0.8978 4.14e-170 2dym:A, 2dym:E, 2dym:C, 3w1s:A
2 7w36:A 262 231 0.2222 0.2214 0.2511 8.11e-10
3 3h9d:B 116 38 0.0460 0.1034 0.3158 5.5
4 8ulg:A 827 44 0.0651 0.0206 0.3864 5.7 7jsn:A, 6mzb:A, 8ufi:A, 8ugb:A, 8ugs:A
5 6hyu:C 585 34 0.0460 0.0205 0.3529 6.0
6 8foc:B 450 55 0.0690 0.0400 0.3273 6.2 6di2:A, 6di6:A, 6dtv:A, 6dtz:A, 6du0:A, 8fod:B, 8foh:B, 8foj:B, 8fok:B, 3lgb:A, 3lgb:B, 7tl2:A, 7tl3:A, 7tl4:A
7 6aaf:A 112 23 0.0421 0.0982 0.4783 9.6
8 2y3a:A 976 47 0.0421 0.0113 0.2340 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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