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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NDIDLIKRLGPSAMDQIMLYLAFSAMRTSGHRHGAFLDAAATAAKCAIYMTYLEQGQNLRMTGHLHHLEPKRVKIIVEEV
RQALMEGKLLKTLGSQEPRYLIQFPYVWMEQYPWIPPGTSLTSEEKRQIEHKLPSNLPDAQLVTSFEFLELIEFLHKRSQ
EDLPPEHRMELSEALAEHIKRRLLYSGTVTRIDSPWGMPFYALTRPERTYIMVEDTARYFRMMKDWAEKRPNAMRALEEL
DVPPERWDEAMQELDEIIRTWADKYHQVIPMILQMVFGRK

The query sequence (length=280) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4yrv:A 288 288 1.0000 0.9722 0.9722 0.0 4hri:B, 4hri:A, 4ynl:B, 4ynl:A, 4ynl:N, 4ynl:M
2 4j00:A 297 295 0.8929 0.8418 0.8475 8.13e-175 4izz:A, 4izz:B, 4j00:B, 4j01:A, 4j01:B, 4j01:E, 4j01:F, 4yrv:B
3 8ap6:E 383 47 0.0643 0.0470 0.3830 0.67 8ap6:e, 8ap7:E, 8ap7:e, 8apa:e, 8apb:e, 8apc:e, 8apd:e, 8ape:e, 8apf:e, 8apg:e, 8aph:e, 8apj:e, 8apk:e
4 7d21:A 328 59 0.0571 0.0488 0.2712 1.3 7d1h:A, 7d1n:A, 7d1y:A, 7d2d:A, 7d2i:A, 7d2j:A, 4mhn:A, 4mhy:A, 4mhz:A
5 6c7n:D 389 120 0.1071 0.0771 0.2500 3.2
6 6c7n:A 553 120 0.1071 0.0542 0.2500 5.6 6c7n:B, 6c7n:C
7 8wus:E 453 75 0.0750 0.0464 0.2800 6.3 6b1q:A, 6b1r:A, 6b1s:A, 6b1s:B, 8cs0:A, 1d0e:A, 1d1u:A, 8dw1:A, 8dw8:A, 8dwm:A, 2fjv:A, 2fjw:A, 2fjx:A, 3fsi:A, 2fvp:A, 2fvq:A, 2fvr:A, 2fvs:A, 4hkq:A, 1i6j:A, 4m94:A, 4m95:A, 6mig:A, 6mih:A, 6mik:A, 1n4l:A, 1qai:A, 1qai:B, 1qaj:A, 2r2r:A, 2r2s:A, 2r2t:A, 2r2u:A, 7uyn:A, 7uyo:A, 7uyp:A, 5vbs:A, 8wut:E, 8wuv:E, 4xo0:A, 4xpc:A, 4xpe:A, 8ygj:E, 1ztt:A, 1ztw:A
8 1gq2:A 555 177 0.1500 0.0757 0.2373 6.6 1gq2:B, 1gq2:C, 1gq2:D, 1gq2:E, 1gq2:F, 1gq2:G, 1gq2:H, 1gq2:I, 1gq2:J, 1gq2:K, 1gq2:L, 1gq2:M, 1gq2:N, 1gq2:O, 1gq2:P
9 5ini:F 511 32 0.0393 0.0215 0.3438 8.7 5inf:B, 5inf:F, 5ini:A, 5ini:D, 5ini:B, 5ini:C, 5ini:E
10 8hzv:A 479 41 0.0536 0.0313 0.3659 8.9 8hzv:B, 8hzv:C, 8hzv:D, 8hzy:A, 8hzy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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