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BioLiP
>protein
NDDIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1hlo:A 80 80 1.0000 1.0000 1.0000 6.87e-54
2 5eyo:C 88 71 0.8875 0.8068 1.0000 2.16e-47 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
3 5i50:B 96 70 0.4000 0.3333 0.4571 5.30e-14 5i50:A, 1nkp:A, 1nkp:D
4 1an4:A 65 63 0.3250 0.4000 0.4127 6.10e-09 1an4:B
5 8ia3:E 111 71 0.3000 0.2162 0.3380 2.32e-07 8ia3:A, 8ia3:B, 8ia3:F
6 1am9:C 82 66 0.2625 0.2561 0.3182 3.82e-06 1am9:D, 1am9:A, 1am9:B
7 8osb:B 66 51 0.2125 0.2576 0.3333 9.23e-06
8 8hov:A 87 74 0.2750 0.2529 0.2973 2.80e-04 8hov:C, 8hov:B, 8hov:D, 8hov:E, 8hov:F
9 8ow1:B 116 48 0.2250 0.1552 0.3750 0.001 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
10 7f2f:B 94 71 0.2250 0.1915 0.2535 0.001 7f2f:A
11 1mdy:A 68 55 0.1875 0.2206 0.2727 0.005 1mdy:B, 1mdy:C, 1mdy:D
12 5gnj:B 77 51 0.2125 0.2208 0.3333 0.006 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
13 7xi3:A 287 55 0.2250 0.0627 0.3273 0.038
14 1nlw:A 79 70 0.2750 0.2785 0.3143 0.038 1nlw:D
15 7xq5:A 75 67 0.2375 0.2533 0.2836 0.049
16 4a15:A 596 76 0.2500 0.0336 0.2632 0.064 5h8w:A, 2vsf:A
17 7xi4:A 283 62 0.2500 0.0707 0.3226 0.13 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
18 4zpr:A 235 48 0.1750 0.0596 0.2917 0.44
19 7d8t:A 199 55 0.2000 0.0804 0.2909 0.52 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
20 8osk:M 316 72 0.2250 0.0570 0.2500 0.67 4h10:B, 8osl:M, 8osl:O
21 7z5i:A 56 52 0.1500 0.2143 0.2308 0.82 7z5i:B, 7z5k:A, 7z5k:B
22 7aor:al 292 23 0.1375 0.0377 0.4783 1.1 6hiv:DL, 6hiw:DL
23 6vrc:A 1007 27 0.1625 0.0129 0.4815 1.6
24 6vrb:A 1031 27 0.1625 0.0126 0.4815 1.7
25 1a0a:A 63 62 0.1875 0.2381 0.2419 1.7 1a0a:B
26 5nj8:D 134 53 0.1875 0.1119 0.2830 2.3
27 1aqe:A 110 42 0.1625 0.1182 0.3095 3.3 1czj:A
28 3afv:A 439 37 0.1375 0.0251 0.2973 4.6 2d3q:A, 2d3q:B, 3mm1:A, 3mm2:A, 3mm3:A, 3vxi:A, 3vxj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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