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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NCTSSSATVHWLGDKPTYHAGVTFGLPWPQGKYRPQETSFSLTGDTLQSWATGYWADGSLKWTAHAIAESNQIYDQYTVT
ASSLGCVKSSSSSSESSAPNSSIVVTDNSDALTVNTGEVAVSFPKGGNVIIGDIKTKSGKVIGANGRLVLQSQDSVPDNF
DNRANSPIQYSNFDGNINEVFVNQTSARTLVTVRGNHTVTDGTDHDPWLPFVVRFYLYANSATIKVMHSIVFDGDENDFI
TGLGIRFDVPLKGEEYYDRHIRFAGVDGGIFNEAVQGITGLRRDPGEEIRAAQFAGQKLADTETWEPRVSTRLKWIPTWA
DYGLTQLTADGFGLKKRTKAGQSWVNIPSGTRAEGLAYLGGATQGGLAVGLRDFWKRYPVGLDISNAASDTGELTLWLYS
PAAEPLDLRPFHDGLGQDGYEDQLDALEITYEDWEPGFDTPYGIARTSEVYLFAFDQTPTSDKLASLTAYMNDPPVLVAE
PKYIHETQALGEYWALPSASPAAATLEDRLQFIFDFYKGQIEQRRWYGFLDYGDFMHTYDPDRHTWRYDVGGYAWDNSEL
SPDLFFWLYFLRTGSKDAYRFAEALTRHTGEVDVYHIGDWKGLGTRHGVQHWSDSAKQARISQPQYRKYFFYLSGGDERV
GELLEELLDTDKTYGELDPQRKVRTDGWEPSPNSTVSFGLGTDWSGLAAGWLIEWERRGPRWEEAKTKLTNTIAGIANLT
NGFVTGSGLYDPVTWTLGPPPSDPGNRGNVSISHLNAVFGLPEVVSEAIAYLADDIPKGFKQAWLDYCYYYHASASEQKD
RYGVSFSKISLLQAHSRLAAYAAYETKNKTLALRAWKDFYASDGLLPDAPWNITHVDGSDVLVPVDEAAWLATNDIAQYG
LAVIQNLAYVSDSLDDYQSLE

The query sequence (length=901) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5xq3:A 901 901 1.0000 1.0000 1.0000 0.0 5xq3:B, 5xqg:A, 5xqg:B, 5xqg:C, 5xqg:D, 5xqg:E, 5xqg:F, 5xqg:G, 5xqg:H, 5xqj:A, 5xqj:B, 5xqj:C, 5xqj:D, 5xqj:E, 5xqj:F, 5xqj:G, 5xqj:H, 5xqo:A, 5xqo:B
2 4z71:B 163 50 0.0233 0.1288 0.4200 1.7 5kde:A, 5kdf:A, 1wcf:A, 4z70:A, 4z70:B, 4z70:C, 4z71:A, 4z71:C, 4z72:A, 4z73:A, 4z73:B, 4z73:C, 4z73:D, 4z73:F, 4z73:G, 4z73:E, 4z73:H, 4z73:I, 4z73:J, 4z73:K, 4z73:L, 4z74:A, 4z74:B, 4z74:C, 4z74:D, 4z74:F, 4z74:G, 4z74:E, 4z74:H, 4z74:I, 4z74:J, 4z74:K, 4z74:L
3 1jlx:A 299 30 0.0155 0.0468 0.4667 2.0 1jlx:B
4 6qp1:B 398 61 0.0244 0.0553 0.3607 2.2 6qp1:A, 6qp2:A, 6qp2:B
5 8eop:A 1687 122 0.0377 0.0202 0.2787 3.6
6 2zof:A 478 70 0.0244 0.0460 0.3143 5.6 4ruh:A, 4ruh:B, 2zof:B, 2zog:A, 2zog:B
7 8adl:B 801 107 0.0277 0.0312 0.2336 6.5 8adl:G, 8adl:O, 8adl:J
8 4thi:A 362 72 0.0233 0.0580 0.2917 8.5
9 8ee6:A 1808 79 0.0255 0.0127 0.2911 9.7 8edw:A
10 3iln:A 251 21 0.0133 0.0478 0.5714 9.9 3iln:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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