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BioLiP
>protein
NAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQNEGTGKSSWW
MLN

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3co6:C 91 83 1.0000 0.9121 1.0000 4.56e-57 3co7:C, 3co7:F, 3coa:C, 3coa:F, 5dui:A, 5dui:B, 6lbi:C, 6lbi:D, 6lbi:G, 6lbi:H, 6lbi:K, 6lbi:L, 4lg0:A
2 2uzk:A 97 80 0.8554 0.7320 0.8875 1.04e-50 2uzk:C
3 3l2c:A 85 83 0.8554 0.8353 0.8554 2.56e-50
4 7cby:C 100 80 0.4458 0.3700 0.4625 2.31e-19
5 7vov:A 93 79 0.4578 0.4086 0.4810 2.75e-19 7vou:C, 7vov:B
6 3g73:B 95 77 0.4337 0.3789 0.4675 1.54e-17 7fj2:A, 7fj2:B, 7fj2:E, 7fj2:F, 3g73:A
7 8bzm:E 95 80 0.4337 0.3789 0.4500 2.58e-17 8bzm:I, 8bzm:A, 8bzm:J
8 2a07:J 83 66 0.3614 0.3614 0.4545 3.81e-17 2a07:K, 2a07:F, 2a07:G, 2a07:H, 2a07:I, 2as5:F, 2as5:G
9 6ako:C 97 79 0.3855 0.3299 0.4051 7.98e-17 6akp:C, 6lbm:C, 6o3t:A, 6o3t:B
10 2c6y:A 98 79 0.4217 0.3571 0.4430 2.02e-16 2c6y:B
11 6ncm:A 91 68 0.3735 0.3407 0.4559 1.06e-15 6nce:A, 6ncm:B
12 2hdc:A 97 79 0.4096 0.3505 0.4304 1.20e-15
13 7tdw:A 90 67 0.3735 0.3444 0.4627 1.43e-15 8sro:A, 8sro:C, 8sro:D, 8sro:B, 8srp:J, 8srp:G, 8srp:E, 8srp:D, 8srp:B, 8srp:A, 8srp:F, 8srp:C, 7tdx:A
14 3qrf:G 82 67 0.3735 0.3780 0.4627 2.19e-15 3qrf:F, 3qrf:H, 3qrf:I, 4wk8:F, 4wk8:G
15 8vfy:O 102 79 0.3855 0.3137 0.4051 6.25e-15 8vfz:O, 8vfz:P, 8vg1:O, 8vg2:O, 7vox:A, 7vox:C, 7vox:H, 7vox:B, 1vtn:C
16 7yze:A 87 79 0.3855 0.3678 0.4051 1.07e-14 5x07:F, 5x07:C, 5x07:L, 5x07:I, 7yzf:C
17 6el8:A 89 77 0.4096 0.3820 0.4416 1.35e-14 6el8:D
18 7yza:A 122 79 0.3373 0.2295 0.3544 1.28e-10 7yz7:A, 7yzc:A, 7yzd:A
19 7yzg:A 121 80 0.3614 0.2479 0.3750 6.21e-09
20 7yzb:A 125 80 0.2892 0.1920 0.3000 6.47e-08
21 2c2w:A 291 55 0.2169 0.0619 0.3273 0.026 2c2w:B, 2c2w:C, 2c4t:A, 2c4t:B, 2c4t:C, 2c5b:A, 2c5b:B, 2c5b:C, 2c5h:A, 2c5h:C, 2c5h:B, 2cbx:A, 2cbx:B, 2cbx:C, 4cqj:A, 4cqj:B, 4cqj:C, 5fiu:A, 5fiu:C, 5fiu:B, 1rqp:A, 1rqp:B, 1rqp:C, 1rqr:A, 1rqr:B, 1rqr:C, 2v7t:A, 2v7t:C, 2v7t:B, 2v7u:A, 2v7u:C, 2v7u:B, 2v7v:A, 2v7v:B, 2v7v:C, 2v7w:A, 2v7w:C, 2v7w:B, 2v7x:A, 2v7x:B, 2v7x:C
22 3kdo:C 440 52 0.1807 0.0341 0.2885 0.38 3a12:A, 3a12:B, 3a12:C, 3a12:D, 3a12:E, 3a12:F, 3a12:G, 3a12:H, 3a12:I, 3a12:J, 3a13:A, 3a13:B, 3a13:C, 3a13:D, 3a13:E, 3a13:F, 3a13:G, 3a13:H, 3a13:I, 3a13:J, 3kdn:A, 3kdn:H, 3kdn:B, 3kdn:G, 3kdn:C, 3kdn:F, 3kdn:D, 3kdn:J, 3kdn:E, 3kdn:I, 3kdo:A, 3kdo:H, 3kdo:B, 3kdo:G, 3kdo:F, 3kdo:D, 3kdo:J, 3kdo:E, 3kdo:I, 3wqp:A, 3wqp:B, 3wqp:C, 3wqp:D, 3wqp:E, 3wqp:F, 3wqp:G, 3wqp:H, 3wqp:I, 3wqp:J
23 7ap5:AAA 164 58 0.2048 0.1037 0.2931 0.63 7ap5:CCC, 7ap5:EEE, 7ap5:GGG, 7ap5:III, 7ap5:KKK, 7ap5:MMM, 7ap5:OOO, 5aqd:A, 5aqd:B, 5aqd:C, 5aqd:D, 5aqd:E, 5aqd:F, 5aqd:G, 5aqd:H, 5aqd:I, 5aqd:J, 5aqd:K, 5aqd:L, 7f86:A, 7f86:W, 7f86:D, 7f86:B, 7f86:F, 7f86:H, 7f86:J, 7f86:L, 7f86:O, 7f86:Q, 7f86:U, 7f86:Y, 5fvb:A, 5fvb:B, 5fvb:C, 5fvb:D, 5fvb:E, 5fvb:F, 5fvb:G, 5fvb:H, 5fvb:I, 5fvb:J, 5fvb:K, 5fvb:L, 5nb3:A, 5nb3:B, 5nb3:C, 5nb3:D, 5nb3:E, 5nb3:F, 5nb3:G, 5nb3:H, 5nb3:I, 5nb3:J, 5nb3:K, 5nb3:L, 5nb4:A, 5nb4:B, 5nb4:C, 5nb4:D, 5nb4:E, 5nb4:F, 5nb4:G, 5nb4:H, 5nb4:I, 5nb4:J, 5nb4:K, 5nb4:L
24 4cqb:A 402 48 0.1807 0.0373 0.3125 0.91 5akq:A, 5akq:B, 4cqb:B, 4cqc:A, 4cqc:B, 4cqd:A, 4cqd:B, 2qt3:A, 2qt3:B
25 5b6i:A 292 62 0.2169 0.0616 0.2903 3.7 5b6i:B, 5lmz:A, 5lmz:B
26 9eqg:D 353 22 0.0964 0.0227 0.3636 4.8 6d6t:B, 6d6t:D, 6d6u:B, 6d6u:D, 8dd2:D, 8dd2:B, 8dd3:D, 8dd3:B, 6dw0:A, 6dw0:C, 6dw1:C, 6dw1:A, 9eqg:A, 8foi:A, 8foi:C, 8g4n:A, 8g4n:C, 8g4o:C, 8g4x:A, 8g5f:C, 8g5g:A, 8g5h:C, 6hug:A, 6hug:D, 6huj:A, 6huj:D, 6huk:A, 6huk:D, 6huo:A, 6huo:D, 6hup:A, 6hup:D, 6i53:A, 6i53:D, 7pbd:A, 7qne:A, 7qne:D, 8sgo:B, 8sgo:D, 8si9:B, 8si9:D, 8sid:B, 8sid:D, 7t0w:D, 7t0z:D, 7t0z:B, 8vqy:B, 8vqy:D, 8vrn:D, 8vrn:B, 6x3s:D, 6x3s:B, 6x3t:D, 6x3t:B, 6x3u:D, 6x3v:D, 6x3w:D, 6x3w:B, 6x3x:D, 6x3x:B, 6x3z:D, 6x3z:B, 6x40:D, 6x40:B
27 6q9v:B 145 52 0.1928 0.1103 0.3077 6.3 6q9v:A, 6qa0:A, 6qa0:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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