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BioLiP
>protein
NASTVYVPTETSDTSLTVKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNHLGPN
A

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7z0r:A 81 81 1.0000 1.0000 1.0000 1.01e-57 7z0r:B, 7z0u:A
2 2ayd:A 76 62 0.4444 0.4737 0.5806 8.00e-23
3 1wj2:A 71 69 0.4568 0.5211 0.5362 3.92e-22 2lex:A
4 8iex:A 88 73 0.3951 0.3636 0.4384 1.49e-20
5 8k31:B 79 73 0.3951 0.4051 0.4384 6.97e-20
6 6j4g:B 58 60 0.3704 0.5172 0.5000 6.71e-17
7 6j4f:B 63 62 0.3704 0.4762 0.4839 2.27e-16 6j4f:F
8 5w3x:D 73 62 0.3457 0.3836 0.4516 1.28e-12 7p8k:B, 5w3x:B
9 7d11:A 79 63 0.3210 0.3291 0.4127 1.74e-12 6j4e:B
10 6ir8:A 69 59 0.3086 0.3623 0.4237 3.66e-12
11 5w1j:A 584 32 0.1235 0.0171 0.3125 2.2 5w1j:B, 5w1l:A, 5w1l:B
12 4rdv:B 451 30 0.1481 0.0266 0.4000 3.7 3mdu:A, 3mdw:A, 3mdw:B, 3mdw:C, 3mdw:D, 4rdv:A, 4rdv:C, 4rdv:D, 4rdw:A, 4rzb:A, 4rzb:B
13 2ysm:A 111 33 0.1481 0.1081 0.3636 5.3
14 8tqm:A 843 29 0.1358 0.0130 0.3793 7.9
15 5cxy:A 292 33 0.1481 0.0411 0.3636 8.5 5bo6:A, 5bo6:B, 5bo7:A, 5bo7:B, 5bo9:A, 5bo9:B, 5cxy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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