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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NAQIIFNVHPAPTRKIAVAKQNYRCAGCGIRTDPDYIKRLRYCEYLGKYFCQCCHENAQMAIPSRVLRKWDFSKYYVSNF
SKDLLIKIWNDPLFNVQDINSALYRKVKLLNQVRLLRVQLCHMKNMFKTCRLAKELLDSFDTVPGHLTEDLHLYSLNDLT
ATRKGELGPRLAELTRAGATHVERCMLCQAKGFICEFCQNEDDIIFPFELHKCRTCEECKACYHKACFKSGSCPRCERLQ
ARREALA

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6wcw:A 247 247 1.0000 1.0000 1.0000 0.0
2 3qyp:B 228 44 0.0648 0.0702 0.3636 0.13 3qu2:A, 3qu2:B, 3qu2:C, 3qu2:D, 3qu4:A, 3qu4:B, 3qu4:C, 3qu4:D, 3qu4:E, 3qu4:F, 3qu4:G, 3qu4:H, 3qu7:A, 3qu7:B, 3qu9:A, 3quq:A, 3qut:A, 3qx7:A, 3qxg:A, 3qxg:B, 3qyp:A
3 2zts:C 226 76 0.0850 0.0929 0.2763 1.0 2zts:A, 2zts:B
4 6iry:A 468 167 0.1417 0.0748 0.2096 2.3 6irz:A, 6is0:A
5 7ood:n 112 81 0.1093 0.2411 0.3333 4.4 7p6z:n, 7pah:n, 7pai:n, 7paj:n, 7pak:n, 7pal:n, 7pam:n, 7pan:n, 7pao:n, 7paq:n, 7par:n, 7pas:n, 7pat:n, 7pau:n, 7ph9:n, 7pha:n, 7phb:n, 7phc:n, 7pi8:n, 7pi9:n, 7pia:n, 7pib:n, 7pic:n, 7pio:n, 7pip:n, 7piq:n, 7pir:n, 7pis:n, 7pit:n
6 3e0b:A 166 38 0.0526 0.0783 0.3421 5.2 3dat:A, 3e0b:B, 4elb:A, 4elb:H, 4elb:C, 4elb:B, 4elb:G, 4elb:F, 4elb:D, 4elb:E, 4ele:A, 4ele:B, 4ele:C, 4ele:D, 4ele:E, 4ele:F, 4ele:G, 4ele:H, 4elf:A, 4elf:B, 4elf:C, 4elf:D, 4elf:E, 4elf:F, 4elf:G, 4elf:H, 4elg:A, 4elg:B, 4elg:C, 4elg:D, 4elg:E, 4elg:F, 4elg:G, 4elg:H, 4elh:A, 4elh:H, 4elh:C, 4elh:B, 4elh:G, 4elh:F, 4elh:D, 4elh:E, 3fl8:A, 3fl8:B, 3fl8:C, 3fl8:D, 3fl8:E, 3fl8:F, 3fl8:G, 3fl8:H, 3fl9:A, 3fl9:B, 3fl9:C, 3fl9:D, 3fl9:E, 3fl9:F, 3fl9:G, 3fl9:H, 3jvx:A, 3jvx:B, 3jw3:A, 3jw3:B, 3jw5:A, 3jw5:B, 3jwc:A, 3jwc:B, 3jwf:A, 3jwf:B, 3jwk:A, 3jwk:B, 3jwm:A, 3jwm:B, 2kgk:A, 2qk8:A, 3s9u:A, 3s9u:B, 3sa1:A, 3sa1:B, 3sa2:A, 3sa2:B, 3sai:A, 3sai:B
7 6mpx:A 673 53 0.0729 0.0267 0.3396 7.1 1t61:C, 1t61:F
8 5bxy:A 155 41 0.0405 0.0645 0.2439 7.9 5bxy:B
9 3dv9:A 243 32 0.0486 0.0494 0.3750 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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