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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NANLDTLYRQVIMDHYKNPRNKGVLNDSIVVDMNNPTCGDRIRLTMKLDGDIVEDAKFEGEGCSISMASASMMTQAIKGK
DIETALSMSKIFSDMMQGKELGDIEALQGVSKFPARIKCATLSWKALEKGVA

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2azh:A 147 138 1.0000 0.8980 0.9565 1.03e-93 6jzv:A, 6jzv:B, 6jzv:C, 6jzv:D, 6jzw:A, 6jzw:B, 6jzw:C, 6jzw:D, 1xjs:A, 5xt5:D, 5xt5:C, 5xt6:D, 5xt6:C
2 1su0:B 136 134 0.5303 0.5147 0.5224 7.10e-46
3 2qq4:A 138 134 0.4924 0.4710 0.4851 7.26e-45 2qq4:B, 2qq4:C, 2qq4:D, 2qq4:E, 2qq4:F, 2qq4:G, 2qq4:H, 2qq4:I, 2qq4:J
4 8odq:A 150 141 0.4015 0.3533 0.3759 2.53e-30 8odq:C
5 6a6f:A 136 128 0.4015 0.3897 0.4141 1.62e-25 6a6f:B, 6a6g:C, 6a6g:D
6 2z7e:B 140 127 0.3258 0.3071 0.3386 7.73e-20
7 4eb5:C 138 125 0.3409 0.3261 0.3600 1.85e-18 4eb5:D, 4eb7:C
8 1r9p:A 134 130 0.3409 0.3358 0.3462 1.28e-17
9 7cnv:A 132 127 0.3030 0.3030 0.3150 4.75e-17 7c8m:A, 7c8m:C, 7c8n:A, 7c8o:D, 7c8o:B, 7cnv:B, 7cnv:C, 7cnv:D, 7cnv:E, 7cnv:F
10 5wlw:D 128 127 0.3182 0.3281 0.3307 1.55e-13
11 1wfz:A 130 78 0.2273 0.2308 0.3846 2.72e-09 6nzu:D, 6nzu:H, 8pk8:D, 8pk9:D, 8pka:D, 5wlw:H
12 6bn2:A 393 57 0.1364 0.0458 0.3158 3.2
13 1r0z:C 277 25 0.0758 0.0361 0.4000 8.0 1q3h:A, 1q3h:B, 1q3h:C, 1q3h:D, 1r0x:A, 1r0x:B, 1r0x:C, 1r0x:D, 1r0y:A, 1r0y:B, 1r0y:C, 1r0y:D, 1r0z:A, 1r0z:B, 1r0z:D, 1r10:A, 1r10:B, 3si7:A, 3si7:B, 3si7:C, 3si7:D, 1xf9:A, 1xf9:B, 1xf9:C, 1xf9:D, 1xfa:A, 1xfa:B
14 6yw5:LL 128 57 0.1288 0.1328 0.2982 9.9 6ywe:LL, 6ywx:LL, 6ywy:LL

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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