Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NAMNTVCTACMATNRLPEERIDDGAKCGRCGHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETA
AERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLSRD

The query sequence (length=144) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3p2a:A 145 144 1.0000 0.9931 1.0000 1.57e-106 3p2a:B, 3p2a:C, 3p2a:D
2 2ppt:A 149 142 0.3889 0.3758 0.3944 6.73e-39 2ppt:B
3 7ysi:A 143 142 0.3889 0.3916 0.3944 2.48e-34
4 7d6l:A 142 128 0.3611 0.3662 0.4062 1.05e-31
5 6slo:A 214 106 0.2708 0.1822 0.3679 2.35e-22 6lur:B, 6lur:C, 6lur:D, 6lur:A, 6lur:E, 6slo:C, 6slo:D
6 1nw2:A 105 100 0.2639 0.3619 0.3800 3.70e-22 1nw2:B, 1nw2:C, 1nw2:D, 1nw2:E, 1nw2:F, 1nw2:H
7 1v98:A 92 84 0.2431 0.3804 0.4167 1.96e-21 1v98:B
8 6yt3:B 376 102 0.2639 0.1011 0.3725 7.71e-21 4f6t:B, 6gu5:B, 6guj:B, 6gx4:B, 6h6w:B, 6h73:B, 6h74:B, 6h8b:B, 6h8h:B, 4ndo:B, 4ndp:B, 4ndq:B, 4ndr:B, 5o5w:B, 6ris:B, 6rj4:B, 6rj4:D, 6rj4:F, 6rkd:B, 6rkd:F, 6rkd:D, 6rkd:H, 6rkd:J, 6rkd:L, 6rke:B, 6rke:D, 6rke:F, 6rke:H, 6rke:J, 6rke:L, 7z5j:B, 7z5j:D, 7z5j:F, 7z5j:H, 7z5j:J, 7z5j:L, 7zqq:B, 7zr4:B, 7zse:B
9 7scd:A 371 106 0.2708 0.1051 0.3679 1.43e-20 3bd9:A, 7sce:A
10 3hxs:A 117 90 0.2569 0.3162 0.4111 3.12e-18 3hyp:A
11 3o6t:B 110 82 0.2083 0.2727 0.3659 4.72e-18 3o6t:A, 3o6t:C, 3o6t:D
12 6ibl:A 397 106 0.2569 0.0932 0.3491 1.03e-17 5a8e:A, 4ami:A, 4ami:B, 4amj:A, 4amj:B, 4bvn:A, 8dcr:R, 8dcs:R, 2eiq:A, 2eiq:B, 2eir:A, 2eir:B, 2eir:C, 2eir:D, 5f8u:B, 5f8u:A, 6h7j:A, 6h7j:B, 6h7l:A, 6h7l:B, 6h7m:A, 6h7m:B, 6h7n:A, 6h7n:B, 6h7o:A, 6h7o:B, 5hr0:A, 5hr0:B, 5hr1:D, 5hr2:A, 4hu7:A, 4hu7:B, 4hu9:A, 4hua:A, 6ibl:B, 7jjo:R, 1keb:A, 1keb:B, 7s0f:R, 7s0g:R, 1tho:A, 6tko:A, 2trx:A, 2trx:B, 1txx:A, 2vt4:A, 2vt4:B, 2vt4:C, 2vt4:D, 2y00:A, 2y00:B, 2y01:A, 2y01:B, 2y02:A, 2y02:B, 2y03:A, 2y03:B, 2y04:A, 2y04:B, 2ycw:A, 2ycw:B, 2ycx:A, 2ycx:B, 2ycy:A, 2ycy:B, 2ycz:A, 2ycz:B, 3zpq:A, 3zpq:B, 3zpr:A, 3zpr:B
13 6z7o:A 110 77 0.1806 0.2364 0.3377 5.55e-15
14 3f3q:A 109 89 0.2014 0.2661 0.3258 3.14e-14 3f3r:A, 3f3r:B
15 3idv:A 235 101 0.2292 0.1404 0.3267 1.99e-13
16 3idv:A 235 80 0.1528 0.0936 0.2750 1.07e-09
17 5g31:A 105 71 0.1875 0.2571 0.3803 6.23e-13
18 3qdn:A 285 108 0.2014 0.1018 0.2685 1.28e-12 3qou:A
19 5ayk:A 744 78 0.2153 0.0417 0.3974 1.09e-11 5ayl:A
20 5ayk:A 744 89 0.1389 0.0269 0.2247 3.27e-04 5ayl:A
21 5ayk:A 744 91 0.1528 0.0296 0.2418 0.010 5ayl:A
22 5ayk:A 744 85 0.1319 0.0255 0.2235 0.013 5ayl:A
23 2xc2:A 110 76 0.1736 0.2273 0.3289 1.41e-11 2xbq:A
24 6i7s:B 462 65 0.1597 0.0498 0.3538 1.52e-11 6i7s:A
25 6i7s:B 462 57 0.0972 0.0303 0.2456 0.002 6i7s:A
26 5ykw:A 106 82 0.1806 0.2453 0.3171 7.09e-11
27 3wgx:B 112 87 0.1806 0.2321 0.2989 8.53e-11 3wgx:A
28 4pom:A 107 77 0.1528 0.2056 0.2857 1.09e-09 1cqg:A, 1cqh:A, 1mdi:A, 1mdj:A, 1mdk:A, 4pol:A, 4pol:B
29 5xwm:D 368 91 0.1736 0.0679 0.2747 8.84e-09 5xwm:A, 5xwm:C, 5xwm:B
30 5nyn:A 119 82 0.1944 0.2353 0.3415 2.79e-08
31 5crw:A 242 89 0.2014 0.1198 0.3258 9.17e-07
32 3w8j:B 122 83 0.1389 0.1639 0.2410 9.32e-07 3w8j:A
33 5e37:A 313 91 0.1736 0.0799 0.2747 0.004 5e37:C
34 2yp6:A 143 26 0.0833 0.0839 0.4615 0.012 2yp6:B, 2yp6:C, 2yp6:D
35 6dnl:A 115 94 0.1667 0.2087 0.2553 0.044
36 3t58:B 504 63 0.1181 0.0337 0.2698 0.067 4p2l:A, 4p2l:B, 3t58:A, 3t58:C, 3t58:D, 3t59:A, 3t59:B, 3t59:C, 3t59:D
37 6gxg:B 147 22 0.0764 0.0748 0.5000 0.18 6gxg:A, 6gxg:C, 6gxy:A, 6gxy:B, 6gxy:C
38 5ymx:A 202 73 0.1319 0.0941 0.2603 0.41 6h17:A, 6h35:A, 6h35:B, 6h5b:A, 6hjh:A, 6hjo:A, 6hjo:B, 6izw:A, 5ymx:B
39 5fc1:A 426 99 0.2083 0.0704 0.3030 0.44 5fc5:A, 5fc6:A, 5fc7:A, 5fca:A, 5fca:B, 5fcb:A, 8w6p:A, 8w6p:B, 8w6r:A
40 7lui:A 180 36 0.0764 0.0611 0.3056 0.78
41 8fkx:ST 148 35 0.0764 0.0743 0.3143 1.1 8fkt:ST, 8fku:ST, 8fkv:ST, 8fkw:ST, 8fky:ST
42 2f4m:A 295 35 0.0972 0.0475 0.4000 1.2 2f4o:A
43 4xdd:A 582 40 0.0694 0.0172 0.2500 1.4 8aio:A, 8aio:B, 8aj6:A, 8aj6:B, 8aln:A, 8aln:B, 8ap2:A, 8ap2:B, 5byq:A, 5byq:B, 5byr:A, 5byr:B, 5bys:A, 5bys:B, 1c4a:A, 1c4c:A, 3c8y:A, 8cjy:A, 8cjy:B, 1feh:A, 6gly:A, 6gly:B, 6glz:A, 6glz:B, 6gm0:A, 6gm0:B, 6gm1:A, 6gm1:B, 6gm2:A, 6gm2:B, 6gm3:A, 6gm3:B, 6gm4:A, 6gm4:B, 6gm8:A, 6gm8:B, 6h63:A, 6h63:B, 5la3:A, 5la3:B, 6n59:A, 6n6p:A, 6nac:A, 5oef:A, 5oef:B, 8pvm:A, 8pvm:B, 7qhf:A, 7qhf:B, 8qm3:A, 8qm3:B, 4xdc:A, 4xdc:B, 4xdd:B, 6yf4:A, 6yf4:B
44 3qcp:A 410 70 0.1250 0.0439 0.2571 2.7 3qd9:A, 3qd9:B, 3qd9:C, 3qd9:D
45 3s9f:A 144 79 0.1250 0.1250 0.2278 2.7
46 3lwa:A 167 15 0.0486 0.0419 0.4667 3.2
47 1hr0:W 71 61 0.1458 0.2958 0.3443 5.8 5lmn:W, 5lmo:W, 5lmp:W, 5lmq:W, 5lmr:W, 5lms:W, 5lmt:W, 5lmv:W, 5me0:V, 5me1:V, 6o7k:5
48 8cdv:K 62 45 0.1111 0.2581 0.3556 6.2
49 8i0w:Y 204 44 0.0903 0.0637 0.2955 6.3 5yzg:Y
50 6zym:u 157 46 0.0903 0.0828 0.2826 6.7
51 5v5z:A 488 52 0.1181 0.0348 0.3269 6.9 5fsa:A, 5fsa:B, 5tz1:A, 5tz1:B
52 5mmj:j 99 32 0.0903 0.1313 0.4062 7.0 6eri:BJ, 5mmm:j, 4v61:AJ, 5x8p:j, 5x8r:j
53 5yy2:A 569 41 0.0972 0.0246 0.3415 8.9
54 4hqs:A 135 26 0.0694 0.0741 0.3846 9.4

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218