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BioLiP
>protein
NAMLPTKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKA
ILTTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAIYTKTGLVTYSGPHFSSFGMEKGLEYTTDYFLQCLTSNK
PIEVLPSETWSDDSWYIDQENRKFIKNEGYVSIHEGEATGDIIGGNMSTLNLLQGTSYMPNLKDKILFLEEDSLTGTSTL
KTFDRYLHSLMQQQNFKHVKGIVIGKMQKGAECTIEDIQEMIASKPELAHIPIIANASFGHTTPIFTFPIGGRATIISSK
EKTSITILTH

The query sequence (length=330) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5fd8:A 330 330 1.0000 1.0000 1.0000 0.0 5fd8:B, 5usd:A, 5usd:B, 5usd:C, 5usd:D
2 4inj:A 326 330 0.5576 0.5644 0.5576 1.20e-130 4inj:B
3 4jvo:A 336 321 0.3485 0.3423 0.3583 4.13e-54 4jvo:B, 5k99:A, 5k99:B, 4mi1:A, 4mi1:B, 3t5m:A, 3t5m:B, 3tyx:A, 3tyx:B, 3u1b:A, 3u1b:B
4 4iix:A 338 339 0.3242 0.3166 0.3156 1.70e-41 4iix:B, 4iiy:A, 4iiy:B, 3tlb:A, 3tlb:B, 3tlc:A, 3tlc:B, 3tle:A, 3tle:B, 3tlz:A, 3tlz:B
5 5f5x:A 344 346 0.3303 0.3169 0.3150 6.71e-36 5f5x:B, 5jyb:A
6 5z01:A 305 316 0.2455 0.2656 0.2563 3.73e-21
7 4eys:A 343 317 0.2636 0.2536 0.2744 1.11e-18
8 4xlv:A 310 95 0.0788 0.0839 0.2737 0.12 2auh:A, 3bu3:A, 3bu5:A, 3bu6:A, 5e1s:A, 3ekk:A, 3ekn:A, 3eta:A, 3eta:B, 1gag:A, 5hhw:A, 1i44:A, 4ibm:A, 4ibm:B, 1ir3:A, 1rqq:A, 1rqq:B, 2z8c:A
9 3wwm:A 269 52 0.0515 0.0632 0.3269 0.83
10 3opy:B 884 178 0.1273 0.0475 0.2360 0.84 3opy:D, 3opy:F, 3opy:H
11 2d3t:C 390 80 0.0818 0.0692 0.3375 1.1 2d3t:D, 1wdk:C, 1wdk:D, 1wdl:C, 1wdl:D, 1wdm:C, 1wdm:D
12 7qqk:A 433 43 0.0515 0.0393 0.3953 3.0 7qqk:B, 7qqk:C, 7qqk:D
13 7esy:B 732 80 0.0606 0.0273 0.2500 4.1
14 5irp:A 386 76 0.0576 0.0492 0.2500 4.5 5irp:B, 6q70:A, 6q70:B, 6q71:A, 6q71:B, 6q72:A, 6q72:B, 6q72:D, 6q72:E
15 7xg9:A 286 140 0.1212 0.1399 0.2857 4.8 7xg9:B, 7xlf:A, 7xlf:B
16 7aor:ag 548 32 0.0333 0.0201 0.3438 6.6
17 4evh:A 294 100 0.0848 0.0952 0.2800 6.7
18 7qep:S0 203 30 0.0394 0.0640 0.4333 7.1
19 7ajt:JA 812 92 0.0727 0.0296 0.2609 7.9 7d63:RL, 6ke6:RL, 6lqp:RL, 6lqq:RL, 6lqr:RL, 6lqu:RL, 6lqv:RL, 7suk:LX, 6zqb:JA, 6zqc:JA

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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