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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NAMDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVG
MTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDSTGNVPPLKIYGNPRLTG
IHYQLPMASAQVKSCLLLAGLYARGKTCITEPAPSRDHTERLLKHFHYTLQKDKQSICVSGGGKLKANDISIPGDISSAA
FFIVAATITPGSAIRLCRVGVNPTRLGVINLLKMMGADIEVTHYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDEFP
VLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESLPDGVIIQGGTLEGGEVNSYDDHRIAMAFAVAGTL
AKGPVRIRNCDNVKTSFPNFVELANEVGMNVKGVRGRGGF

The query sequence (length=440) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3slh:D 440 440 1.0000 1.0000 1.0000 0.0 4egr:A, 4egr:B, 4egr:C, 4egr:D, 4egr:E, 4egr:F, 3slh:A, 3slh:B, 3slh:C, 4znd:A
2 1rf4:A 427 414 0.4091 0.4215 0.4348 2.01e-111 1rf4:B, 1rf4:C, 1rf4:D, 1rf6:A, 1rf6:B, 1rf6:C, 1rf6:D
3 2gg6:A 445 436 0.4114 0.4067 0.4151 6.22e-103 2gga:A, 2ggd:A, 2pqb:A, 2pqc:A, 2pqd:A
4 3nvs:A 426 427 0.3000 0.3099 0.3091 1.77e-46
5 8umj:A 443 436 0.3205 0.3183 0.3234 1.67e-41 8umj:B, 8umk:A, 8umk:B, 8uml:A, 8uml:B, 8umm:A, 8umm:B, 8umn:A, 8umn:B
6 7tm5:B 427 425 0.2932 0.3021 0.3035 1.79e-39 7tm5:A, 7tm6:A, 7tm6:B
7 2aa9:A 427 428 0.3068 0.3162 0.3154 4.51e-37 2aay:A, 3fjx:A, 3fjz:A, 3fk0:A, 3fk1:A, 1g6s:A, 1g6t:A, 1mi4:A, 2pq9:A, 1q36:A, 2qfq:A, 2qfs:A, 2qft:A, 2qfu:A, 1x8r:A, 1x8t:A
8 7tbu:A 450 440 0.3023 0.2956 0.3023 1.96e-34 7tbu:B
9 6hqv:A 1555 444 0.3091 0.0875 0.3063 2.22e-33 6hqv:B
10 7m0o:A 400 239 0.1682 0.1850 0.3096 1.50e-22
11 2o0b:A 424 427 0.2705 0.2807 0.2787 2.45e-22 2o0d:A, 2o0e:A, 2o0x:A, 2o0z:A
12 5wi5:A 422 437 0.2432 0.2536 0.2449 1.73e-06 6nkj:A, 6nkj:B, 5wi5:B, 5wi5:C, 5wi5:D
13 4e7b:A 419 437 0.2386 0.2506 0.2403 1.59e-04 1a2n:A, 4e7b:B, 4e7b:C, 4e7b:D, 4e7c:A, 4e7c:B, 4e7d:A, 4e7e:A, 4e7e:D, 4e7f:A, 1eyn:A, 3iss:A, 3iss:B, 3iss:C, 3iss:D, 3iss:E, 3iss:F, 3iss:G, 3iss:H, 3iss:I, 3iss:J, 3iss:K, 3iss:L, 3kqa:A, 3kqa:B, 3kqa:C, 3kqa:D, 3kqj:A, 3kr6:A, 3lth:A, 1q3g:A, 1q3g:B, 1q3g:C, 1q3g:D, 1q3g:E, 1q3g:F, 1q3g:G, 1q3g:H, 1q3g:I, 1q3g:J, 1q3g:K, 1q3g:L, 1q3g:W, 1q3g:X, 1q3g:Y, 1q3g:Z, 1ryw:A, 1ryw:B, 1ryw:C, 1ryw:D, 1ryw:E, 1ryw:F, 1ryw:G, 1ryw:H, 3su9:A, 3swa:A, 3swa:B, 3swd:A, 3swd:B, 3swd:C, 3swd:D, 3swd:E, 3swd:F, 3swd:G, 3swd:H, 3swd:I, 3swd:J, 3swd:K, 3swd:L, 3swi:A, 3swq:A, 1uae:A, 3upk:A, 3v4t:A, 3v4t:B, 3v4t:C, 3v4t:D, 3v4t:E, 3v4t:F, 3v4t:G, 3v4t:H, 1ybg:A, 1ybg:B, 1ybg:C, 1ybg:D, 2z2c:A, 2z2c:B, 2z2c:C, 2z2c:D
14 6cn1:A 422 278 0.1591 0.1659 0.2518 0.001 6cn1:B, 6cn1:C, 6cn1:D, 6cn1:E, 6cn1:F, 6cn1:G, 6cn1:H
15 6cn1:A 422 178 0.1114 0.1161 0.2753 0.84 6cn1:B, 6cn1:C, 6cn1:D, 6cn1:E, 6cn1:F, 6cn1:G, 6cn1:H
16 4r7u:C 419 443 0.2091 0.2196 0.2077 0.039 4r7u:A, 4r7u:B, 4r7u:D
17 5bq2:A 425 157 0.1023 0.1059 0.2866 0.075 5bq2:B, 5bq2:C, 5bq2:D
18 5bq2:A 425 441 0.2341 0.2424 0.2336 0.50 5bq2:B, 5bq2:C, 5bq2:D
19 8d84:A 420 438 0.2409 0.2524 0.2420 0.076 8d84:B, 8d84:C, 8d84:D, 8d84:E, 8d84:F, 8d84:G, 8d84:H, 8d84:I, 8d84:J, 8d84:K, 8d84:L, 7tb0:A, 7tb0:B, 7tb0:C, 7tb0:D
20 3swg:A 417 220 0.1227 0.1295 0.2455 0.17 2yvw:A
21 6q03:A 416 157 0.0864 0.0913 0.2420 0.21 6q0a:A, 6q0y:A, 6q11:A
22 3vcy:A 419 434 0.2136 0.2243 0.2166 0.33 3vcy:B, 3vcy:C, 3vcy:D
23 5aye:A 335 79 0.0477 0.0627 0.2658 1.2 5aye:B, 5aye:C, 5aye:D, 5aye:E, 5aye:F
24 4f9b:A 318 74 0.0500 0.0692 0.2973 3.1 4f99:A, 4f9a:A, 4f9a:C, 4f9b:C, 4f9c:A
25 7ane:ay 141 34 0.0250 0.0780 0.3235 5.3
26 6c7n:D 389 53 0.0409 0.0463 0.3396 5.6
27 1wuf:A 371 66 0.0455 0.0539 0.3030 7.4 1wuf:B
28 2rl1:A 420 232 0.1205 0.1262 0.2284 7.4 2rl2:A, 3swe:A
29 4xyj:A 768 52 0.0341 0.0195 0.2885 8.8 4rh3:A, 4rh3:B, 4rh3:C, 4rh3:D, 4u1r:A, 4u1r:B, 4u1r:C, 4u1r:D, 4wl0:A, 4wl0:B, 4wl0:C, 4wl0:D, 4xyj:B, 4xyj:C, 4xyj:D, 4xyj:E, 4xyj:F, 4xyj:G, 4xyj:H, 4xyk:A, 4xyk:B, 4xyk:C, 4xyk:D, 4xz2:A, 4xz2:B, 4xz2:C, 4xz2:D
30 3vth:A 753 35 0.0295 0.0173 0.3714 9.1 3vth:B, 3vti:A, 3vti:B
31 6c7n:A 553 52 0.0409 0.0325 0.3462 9.3 6c7n:B, 6c7n:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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