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BioLiP
>protein
NAMAFNLRNRNFLKLLDFSTKEIQFLIDLSADLKKAKYAGTEQKKLLGKNIALIFEKASTRTRCAFEVAAFDQGAQVTYI
GPSGSQIGDKESMKDTARVLGRMYDGIQYRGFGQAIVEELGAFAGVPVWNGLTDEFHPTQILADFLTMLEHSQGKALADI
QFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTDVWVSM
GESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCLPAFHNDETTIGKQVADKFGMKGLEVTEEVFESEHSIVFDEAE
NRMHTIKAVMVATLGS

The query sequence (length=336) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4jfr:B 340 336 1.0000 0.9882 1.0000 0.0 4h31:A, 4h31:B, 4h31:C, 4jfr:A, 4jhx:A, 4jhx:C, 4jqo:A, 4jqo:B, 4jqo:C
2 1duv:G 333 327 0.6577 0.6637 0.6758 9.20e-171 1duv:H, 1duv:I, 2otc:A, 2otc:B, 2otc:C, 2otc:D, 2otc:E, 2otc:F, 2otc:G, 2otc:H, 2otc:I
3 4nf2:A 307 326 0.3839 0.4202 0.3957 7.60e-71 4nf2:B, 4nf2:C
4 1c9y:A 321 330 0.3720 0.3894 0.3788 6.24e-66 1ep9:A, 1fb5:A, 1fvo:A, 1fvo:B, 1oth:A
5 4am8:D 349 324 0.3542 0.3410 0.3673 8.19e-64 4a8h:A, 4a8h:B, 4a8p:A, 4a8p:B, 4a8p:C, 4a8p:D, 4a8p:E, 4a8p:F, 4a8t:A, 4am8:A, 4am8:B, 4am8:C, 4am8:E, 4am8:F
6 7nnv:A 308 323 0.3423 0.3734 0.3560 3.58e-63 2i6u:A, 2i6u:B, 2i6u:C, 7nnv:B, 7nnv:C, 7nnv:D, 7nnv:E, 7nnv:F, 7nnw:A, 7nnw:B, 7nnw:C, 7nnw:D, 7nnw:E, 7nnw:F, 7nny:C, 7nny:A, 7nny:B, 7nny:D, 7nny:F, 7nny:E, 7nnz:C, 7nnz:B, 7nnz:D, 7nnz:F, 7nnz:E, 7nor:A, 7nor:C, 7nor:B, 7nor:D, 7nor:F, 7nor:E, 7nos:A, 7nos:C, 7nos:D, 7nos:F, 7nos:E, 7nou:A, 7nou:B, 7nou:C, 7nou:D, 7nou:F, 7nou:E, 7nov:A, 7nov:C, 7nov:B, 7nov:D, 7nov:E, 7nov:F, 7np0:B, 7np0:C, 7np0:A, 7np0:D, 7np0:F, 7np0:E
7 8qeu:A 304 328 0.3690 0.4079 0.3780 9.17e-62 8qeu:B, 8qeu:C, 8qev:A, 8qev:B, 8qev:C
8 3kzk:A 334 358 0.3185 0.3204 0.2989 1.85e-30 3kzm:A, 3kzn:A, 3kzo:A, 3l02:A, 3l04:A, 3l05:A, 3l06:A, 3m4j:A, 3m4n:A, 3m5c:A, 3m5d:A
9 1ml4:A 307 331 0.2321 0.2541 0.2356 9.69e-15
10 7zea:B 346 343 0.2292 0.2225 0.2245 1.87e-12 6fba:A, 6fba:B, 6fba:C, 6hl7:A, 7zcz:A, 7zcz:C, 7zcz:B, 7zea:A, 7zgs:A, 7zgs:C, 7zgs:B, 7zhi:A, 7zhi:C, 7zhi:B, 7zid:B, 7zp2:A, 7zp2:B, 7zst:B, 7zst:C
11 3r7d:A 291 194 0.1667 0.1924 0.2887 1.61e-11 3r7d:C, 3r7d:B, 3r7f:A, 3r7f:B, 3r7f:C, 3r7l:A, 3r7l:B, 3r7l:C, 3r7l:D, 3r7l:E, 3r7l:F
12 6hl7:C 322 342 0.2202 0.2298 0.2164 2.90e-11
13 2a0f:A 310 297 0.2411 0.2613 0.2727 3.04e-11 1acm:A, 1acm:C, 2air:A, 2air:G, 1at1:A, 1at1:C, 2at1:A, 2at1:C, 3at1:A, 3at1:C, 7at1:A, 7at1:C, 8at1:A, 8at1:C, 8atc:A, 8atc:C, 1d09:A, 1d09:C, 1ekx:A, 1ekx:B, 1ekx:C, 4f04:A, 4f04:C, 1f1b:A, 1f1b:C, 4fyv:A, 2fzc:A, 2fzc:C, 2fzg:A, 2fzg:C, 2fzk:A, 2fzk:C, 2h3e:A, 2h3e:C, 2hse:A, 2hse:C, 2ipo:A, 2ipo:C, 4kgv:A, 4kgv:C, 4kgx:A, 4kgx:C, 4kgz:A, 4kgz:C, 4kh0:A, 4kh0:C, 4kh1:A, 4kh1:C, 3mpu:A, 3mpu:C, 3mpu:E, 3npm:A, 1q95:A, 1q95:B, 1q95:C, 1q95:D, 1q95:F, 1q95:E, 1r0b:A, 1r0b:B, 1r0b:C, 1r0b:D, 1r0b:E, 1r0b:F, 1r0c:A, 1r0c:G, 1tth:A, 1tth:C, 1tu0:A, 1tu0:C, 1tug:A, 1tug:C, 5vmq:C, 1xjw:A, 1xjw:C, 1za2:A, 1za2:C
14 8bpl:A 316 287 0.2054 0.2184 0.2404 1.09e-10
15 4ekn:B 304 202 0.1548 0.1711 0.2574 6.62e-10
16 1js1:X 324 320 0.2232 0.2315 0.2344 9.60e-10 2fg6:X, 2fg6:Z, 2fg6:Y, 2fg6:C, 2fg6:D, 2fg6:E, 2fg7:X, 2fg7:Z, 2fg7:Y, 2fg7:C, 2fg7:D, 2fg7:E, 2g7m:X, 2g7m:Z, 2g7m:Y, 2g7m:C, 2g7m:E, 2g7m:D, 1js1:Y
17 6pnz:A 293 197 0.1696 0.1945 0.2893 2.51e-09 6pnz:B, 6pnz:C
18 5g1n:E 307 335 0.2143 0.2345 0.2149 1.24e-07 5g1n:A, 5g1n:B, 5g1n:C, 5g1n:D, 5g1n:F, 5g1p:A, 5g1p:B, 5g1p:C, 5g1p:D, 5g1p:E, 5g1p:F
19 4bjh:B 291 237 0.1667 0.1924 0.2363 1.30e-07 3d6n:B
20 6yvb:C 324 223 0.1815 0.1883 0.2735 2.98e-07 6ypo:A, 6ypo:B, 6ys6:B, 6ys6:C, 6ysp:A, 6ysp:B, 6ysp:C, 6yvb:A, 6yvb:B, 6yvb:D, 6yvb:E, 6yvb:F, 6yw9:A, 6yw9:B, 6yw9:C, 6ywj:A, 6ywj:B
21 6a06:A 188 62 0.0476 0.0851 0.2581 0.27 6a03:A, 6a03:B, 6a04:A, 6a04:B, 6a05:A, 6a05:B, 6a06:B, 6iyf:A, 6iyf:B
22 1orr:A 338 94 0.0744 0.0740 0.2660 0.81 1orr:B, 1orr:C, 1orr:D
23 2oox:E 333 103 0.0595 0.0601 0.1942 2.7 2oox:G, 2ooy:G, 2ooy:E, 2qr1:G, 2qr1:E, 2qrc:G, 2qrc:E, 2qrd:G, 2qrd:E, 2qre:G, 2qre:E
24 6fz6:A 341 47 0.0476 0.0469 0.3404 4.7 6fz6:B
25 2gqt:A 267 47 0.0446 0.0562 0.3191 9.8 2gqu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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