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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NAHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGML
VTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYM
DVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWCALETALPYMTDGRQLRFMFLPDGEDPDT
LVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNK

The query sequence (length=310) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3b39:A 317 310 0.9935 0.9716 0.9935 0.0 3b39:B
2 2au3:A 403 266 0.3032 0.2333 0.3534 5.78e-45
3 5w35:A 321 299 0.3355 0.3240 0.3478 1.55e-44 5w34:A, 5w36:A
4 4edg:A 321 248 0.2774 0.2679 0.3468 2.15e-43 4edk:A, 4edr:A, 4edt:A, 4edv:A, 4ee1:A
5 6pcm:A 793 46 0.0452 0.0177 0.3043 1.6 6pcm:B
6 4yan:A 252 67 0.0613 0.0754 0.2836 2.2 4yan:B, 4yan:C, 4yan:D
7 4jbb:A 208 126 0.1032 0.1538 0.2540 3.3
8 8czq:A 655 39 0.0419 0.0198 0.3333 3.3
9 6cq2:A 688 39 0.0419 0.0189 0.3333 3.5 6cqi:A
10 6nsm:A 194 129 0.1194 0.1907 0.2868 4.0 6nsm:B, 6nsn:A, 6nsn:B, 6nsr:A, 6nsr:B
11 6ii7:A 355 33 0.0419 0.0366 0.3939 5.0
12 8dwj:A 339 68 0.0581 0.0531 0.2647 5.5 8dvf:H, 8dvi:H, 8dw6:H, 8gao:G
13 6bu8:03 134 138 0.1290 0.2985 0.2899 8.4 7jsz:a, 7jt3:a, 7k50:a, 7k51:a, 7k52:a, 7k53:a, 7k54:a, 7k55:a, 7lv0:a, 7n2c:LA, 6ofx:a, 6og7:a, 6ogf:a, 6ogg:a, 6ogi:a, 8peg:a, 8pkl:a, 7qg8:C, 7qgh:C, 7qgn:C, 7qgr:C, 8r3v:a2, 8rcl:a2, 8rcm:a2, 7ss9:a, 7ssd:a, 7ssl:a, 7sso:a, 7ssw:a, 7st2:a, 7st7:a, 7tos:L1, 7ug7:LA, 5uyl:03, 5uym:03, 5uyn:03, 5uyp:03, 5uyq:03, 8vs9:L1, 8vsa:L1, 6wd0:a, 6wd1:a, 6wd2:a, 6wd3:a, 6wd4:a, 6wd5:a, 6wd6:a, 6wd7:a, 6wd8:a, 6wd9:a, 6wda:a, 6wdb:a, 6wdc:a, 6wdd:a, 6wde:a, 6wdf:a, 6wdg:a, 6wdh:a, 6wdi:a, 6wdj:a, 6wdk:a, 6wdl:a, 6wdm:a, 6wnt:a, 6wnv:a, 6wnw:a
14 1iby:A 112 66 0.0645 0.1786 0.3030 8.5 1iby:B, 1iby:C, 1iby:D, 1ibz:A, 1ibz:B, 1ibz:C, 1ibz:D, 1ic0:A, 1ic0:B, 1ic0:C, 1ic0:D, 1ic0:E, 1ic0:F
15 7jn7:A 846 86 0.0645 0.0236 0.2326 9.1 6eor:A, 6eor:C, 6eor:D, 7jn7:D, 6qzv:A, 6qzv:C, 6qzv:D, 7svl:A, 7svl:B, 7svl:C, 7svl:D, 7svn:A, 7svn:B, 7svn:C, 7svn:D, 6x6c:A, 6x6c:D, 7zxs:A, 7zxs:B, 7zxs:C, 7zxs:D
16 6eor:B 805 86 0.0645 0.0248 0.2326 9.8 6qzv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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