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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NADNYKNVINRTGAPQYMKDYDYDDHQRFNPFFDLGAWHGHLLPDGPNTMGGFPGVALLTEEYINFMASNFDRLTVWQDG
KKVDFTLEAYSIPGALVQKLTAKDVQVEMTLRFATPRTSLLETKITSNKPLDLVWDGELLEKLEAKEGKPLSDKTIAGEY
PDYQRKISATRDGLKVTFGKVRATWDLLTSGESEYQVHKSLPVQTEINGNRFTSKAHINGSTTLYTTYSHLLTAQEVSKE
QMQIRDILARPAFYLTASQQRWEEYLKKGLTNPDATPEQTRVAVKAIETLNGNWRSPGGAVKFNTVTPSVTGRWFSGNQT
WPWNTWKQAFAMAHFNPDIAKENIRAVFSWQIQPGDSVRPQDVGFVPDLIAWNLSPERGGDGGNWNERNTKPSLAAWSVM
EVYNVTQDKTWVAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTESGEMLFTVKKGDKEETQSGLNNYARVVEK
GQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSD
NHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAA
TQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLT
ADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFR

The query sequence (length=758) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5gw7:B 760 758 0.9974 0.9947 0.9974 0.0 5ca3:A, 5ca3:B, 3d3i:A, 3d3i:B, 5gw7:A, 3w7s:A, 3w7s:B, 3w7t:A, 3w7t:B, 3w7u:A, 3w7u:B, 3w7w:A, 3w7w:B, 3w7x:A, 3w7x:B
2 6xux:A 879 461 0.6069 0.5233 0.9978 0.0
3 6xux:A 879 295 0.3892 0.3356 1.0000 0.0
4 4wvc:A 413 132 0.0594 0.1090 0.3409 9.11e-09 4wvc:B
5 4wvb:A 394 132 0.0594 0.1142 0.3409 1.17e-08
6 6g3n:A 445 119 0.0475 0.0809 0.3025 6.21e-05 6g3n:B, 5ohz:A, 5ohz:B, 5ohz:C, 5ohz:D, 5oi0:A, 5oi0:B, 5oi1:A, 5oi1:B, 5oie:A, 5oie:B, 5oiv:A, 5oiv:B, 5oiw:A, 5oiw:B, 5oj4:A, 5oj4:B, 5oju:A, 5oju:B, 5ojv:A, 5ojv:B, 5ont:A, 5ont:B, 5onz:A, 5onz:B, 5oo2:A, 5oo2:B
7 7clf:A 335 97 0.0356 0.0806 0.2784 0.29 7clf:B
8 5mqr:A 1082 135 0.0462 0.0323 0.2593 0.63 5mqs:A
9 8sun:B 743 116 0.0409 0.0417 0.2672 2.3 8b8k:A, 8b8k:B, 8b8m:A, 6qp6:A, 6qp6:B, 8sur:B, 8tag:B, 8tai:B, 8tal:B
10 7eaw:A 560 51 0.0224 0.0304 0.3333 2.9 7eaw:B
11 6v9q:A 454 90 0.0303 0.0507 0.2556 3.3 6vbw:A
12 4izg:A 369 39 0.0172 0.0352 0.3333 5.3 4e8g:A, 4e8g:B, 4izg:B, 4j1o:A, 4j1o:B
13 7s2k:A 268 89 0.0277 0.0784 0.2360 6.5 7s2k:B
14 5bxa:A 414 124 0.0409 0.0749 0.2500 8.4
15 6okh:A 178 30 0.0158 0.0674 0.4000 9.9 6okh:B
16 3dws:B 304 45 0.0211 0.0526 0.3556 10.0 3dwr:A, 3dws:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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