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BioLiP
>protein
MYVKLISSDGHEFIVKREHALTSGTIKAMLTNEVNFREIPSHVLSKVCMYFTYKVRYTNSEIPEFPIAPEIALELLMAAN
FLDC

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6gmn:K 87 86 1.0000 0.9655 0.9767 1.95e-57 3dcg:D, 3dcg:B, 6gmx:K
2 2jz3:C 96 96 1.0000 0.8750 0.8750 5.12e-54 9bju:K, 6gmn:B, 6gmx:B
3 1hv2:A 99 93 0.3929 0.3333 0.3548 3.17e-15
4 8zuh:B 137 88 0.3929 0.2409 0.3750 8.64e-05
5 7w0b:A 1586 62 0.2024 0.0107 0.2742 0.58 7w0d:F
6 2vd8:A 387 35 0.1667 0.0362 0.4000 2.8 2vd8:B, 2vd9:A, 2vd9:B
7 1j1t:A 228 84 0.2262 0.0833 0.2262 3.0 4q8k:A, 4q8l:A, 4q8l:B
8 6oh9:A 452 35 0.1667 0.0310 0.4000 5.1 6oha:A
9 8gm4:A 462 41 0.1190 0.0216 0.2439 7.7
10 8fny:A 497 41 0.1190 0.0201 0.2439 7.7 8fny:C, 8fo6:A, 8gm5:A, 7shq:A
11 3acs:A 822 26 0.1071 0.0109 0.3462 8.5 3acs:B, 3act:A, 3act:B, 3afj:A, 3afj:B, 2cqs:A, 2cqs:B, 2cqt:A, 2cqt:B, 3qfy:A, 3qfy:B, 3qfz:A, 3qfz:B, 3qg0:A, 3qg0:B
12 6twi:E 323 36 0.1786 0.0464 0.4167 8.7 4cyw:A, 4cyw:C, 4cyw:E, 4cyz:A, 4cyz:E, 4cz0:A, 4cz0:E, 4cz0:C, 4d00:A, 4d00:C, 4d00:E, 4qy1:E, 4qy1:G, 4qy1:I, 4qy1:U, 4qy2:E, 5tgu:C, 5tgu:E, 5tgu:A, 5tgv:A, 5tgv:C, 5tgv:E, 5th1:A, 5th1:C, 5th1:E, 5thc:E, 5thc:C, 6tva:A, 6tva:C, 6tva:E, 6tvb:A, 6tvb:C, 6tvb:E, 6tvd:A, 6tvd:C, 6tvd:E, 6tvd:G, 6tvd:I, 6tvd:K, 6tvf:A, 6tvf:C, 6tvf:E, 6tvf:G, 6tvf:K, 6tvf:I, 6tvr:K, 6tvs:C, 6tvs:E, 6tvs:K, 6tvt:A, 6tvt:C, 6tvt:E, 6twi:A, 6twi:C, 6twv:C, 6twv:E, 6twv:K, 6twv:G, 6twv:I, 6txo:A, 6txo:C, 6txo:E, 6ty1:A, 6ty1:C, 6ty1:E, 6ty1:G, 6ty1:I, 6ty1:K, 4xqo:A, 4xqo:C, 4xqu:A, 4xqu:C, 4xqu:E
13 7dvq:Y 140 28 0.1429 0.0857 0.4286 9.6 8i0p:Y, 8i0r:Y

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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