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BioLiP
>protein
MYVKLISSDGHEFIVKREHALTSGTIKAMLSTNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLM
AANFLDC

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gmn:K 87 87 0.9885 0.9885 0.9885 4.90e-59 3dcg:D, 3dcg:B, 6gmx:K
2 2jz3:C 96 96 1.0000 0.9062 0.9062 2.84e-58 9bju:K, 6gmn:B, 6gmx:B
3 1hv2:A 99 93 0.4023 0.3535 0.3763 3.89e-16
4 8zuh:B 137 86 0.3563 0.2263 0.3605 1.06e-04
5 1j1t:A 228 39 0.1609 0.0614 0.3590 3.8 4q8k:A, 4q8l:A, 4q8l:B
6 8duj:J 3892 66 0.2069 0.0046 0.2727 5.1
7 8duj:A 3823 66 0.2069 0.0047 0.2727 5.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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