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BioLiP
>protein
MYTMGLDIGSTASKGVILKNGEDIVASETISSGTGTTGPSRVLEKLYGKTGLAREDIKKVVVTGYGRMNYSDADKQISEL
SCHARGVNFIIPETRTIIDIGGQDAKVLKLDNNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSELGSISMNSQNEVSI
SSTCTVFAESEVISHLSENAKIEDIVAGIHTSVAKRVSSLVKRIGVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIP
QLTGALGAALYAFDEAKESQKEVKNISA

The query sequence (length=268) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4eht:A 268 268 1.0000 1.0000 1.0000 0.0 4eht:B, 4ehu:A, 4ehu:B, 4eia:A
2 1hux:A 259 248 0.4963 0.5135 0.5363 9.81e-88 1hux:B
3 7yyl:E 243 248 0.3993 0.4403 0.4315 3.45e-59 7yyl:F, 7yyl:G, 7yyl:H, 7yzm:G, 7yzm:H, 7yzm:E, 7yzm:F, 7yzq:E, 7yzq:F, 7yzq:G, 7yzq:H
4 3h1q:B 272 86 0.0970 0.0956 0.3023 0.050 3h1q:A
5 5kjt:A 431 60 0.0784 0.0487 0.3500 0.48 5kju:A
6 2zl2:A 174 64 0.0821 0.1264 0.3438 0.52 2zl2:B, 2zl2:C, 2zl2:E, 2zl2:F, 2zl2:G, 2zl2:H, 2zl2:K, 2zl2:M, 2zl2:N, 2zl4:A, 2zl4:B, 2zl4:C, 2zl4:D, 2zl4:E, 2zl4:F, 2zl4:G, 2zl4:H, 2zl4:I, 2zl4:J, 2zl4:K, 2zl4:L, 2zl4:M, 2zl4:N
7 3ge1:A 499 50 0.0746 0.0401 0.4000 2.7 3ge1:B, 3ge1:C, 3ge1:D
8 6ujd:A 406 54 0.0597 0.0394 0.2963 3.9
9 6puu:A 1309 60 0.0746 0.0153 0.3333 3.9 8e6t:A, 8e6t:B, 8e6t:C, 8e6t:D, 6pur:A, 6pur:B, 6pur:C, 6pur:D, 6pus:A, 6pus:C, 6pus:D, 6pus:B, 6puu:B, 6puu:C, 6puu:D
10 8e6q:A 1348 60 0.0746 0.0148 0.3333 3.9 8e6q:B, 8e6q:C, 8e6q:D, 8e6r:A, 8e6r:B, 8e6r:C, 8e6r:D, 8e6s:A, 8e6s:B, 8e6s:C, 8e6s:D, 8e6u:A, 8e6u:B, 8e6u:C, 8e6u:D, 6mj2:A, 6mj2:B, 6mj2:C, 6mj2:D
11 8e6v:A 707 60 0.0746 0.0283 0.3333 4.4
12 6iug:A 371 148 0.1381 0.0997 0.2500 7.0 6iug:B, 6iug:C, 6iug:D, 6iug:E
13 2z67:A 434 79 0.0858 0.0530 0.2911 8.7 2z67:B, 2z67:C, 2z67:D
14 4a0g:A 769 56 0.0784 0.0273 0.3750 9.1 4a0f:B, 4a0g:B, 4a0h:A, 4a0h:B, 4a0r:A, 4a0r:B
15 4a0g:C 681 56 0.0784 0.0308 0.3750 9.3
16 7c9r:C 311 119 0.1119 0.0965 0.2521 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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