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BioLiP
>protein
MYTLIKLTSEYTSRAISFTSRNFVASEPTSIALKLTTCDFTTSFQNIMKQCVDYGHSFAFVDADDNIKAQILNIPYDAYE
NMHYGNIRETDPMFDLFGNLDSYTPDDKCLYVFAIGSEVTGKGLATKLLKKTIEESSSHGFKYIYGDCTNIISQNMFEKH
GFETVGSVKYKGYQYGITKPFDSINCTEYIKRMVKTI

The query sequence (length=197) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3qb8:A 197 197 1.0000 1.0000 1.0000 6.80e-148 3qb8:B
2 7ciw:A 216 64 0.0711 0.0648 0.2188 2.30e-04 7civ:A, 7cix:A
3 6v3t:A 213 170 0.2081 0.1925 0.2412 3.31e-04 6v3t:B, 6v3t:C, 6v3t:D, 6v3t:E, 6v3t:G
4 4mbu:A 165 63 0.0863 0.1030 0.2698 0.002 4mbu:B
5 5dwn:A 181 66 0.1015 0.1105 0.3030 0.048 5dwn:B, 5dwn:C, 5dwn:D
6 6k80:A 213 192 0.1980 0.1831 0.2031 0.28 5gi5:A, 5gi6:A, 5gi7:A, 5gi8:A, 5gi9:A, 5gif:A, 5gig:A, 5gih:A, 5gii:A, 3te4:A
7 2h5m:A 102 46 0.0711 0.1373 0.3043 2.3
8 5z2k:A 270 75 0.1066 0.0778 0.2800 2.7 5afs:A, 4cl2:A, 4udo:A, 5zha:A
9 4jxr:B 185 64 0.0812 0.0865 0.2500 3.2
10 3dr8:A 173 58 0.0812 0.0925 0.2759 6.1 3dr8:B
11 8ckb:E066 503 25 0.0508 0.0199 0.4000 6.2 8ckb:E494, 8ckb:E264, 8ckb:E265, 8ckb:E506, 8ckb:E277, 8ckb:E009, 8ckb:E021, 8ckb:E030, 8ckb:E044, 8ckb:E053, 8ckb:E062, 8ckb:E071, 8ckb:E080, 8ckb:E088, 8ckb:E097, 8ckb:E106, 8ckb:E120, 8ckb:E129, 8ckb:E138, 8ckb:E142, 8ckb:E151, 8ckb:E160, 8ckb:E173, 8ckb:E182, 8ckb:E191, 8ckb:E195, 8ckb:E204, 8ckb:E213, 8ckb:E221, 8ckb:E230, 8ckb:E236, 8ckb:E245, 8ckb:E254, 8ckb:E269, 8ckb:E281, 8ckb:E292, 8ckb:E301, 8ckb:E310, 8ckb:E314, 8ckb:E323, 8ckb:E332, 8ckb:E345, 8ckb:E354, 8ckb:E363, 8ckb:E369, 8ckb:E378, 8ckb:E386, 8ckb:E395, 8ckb:E404, 8ckb:E418, 8ckb:E427, 8ckb:E436, 8ckb:E440, 8ckb:E449, 8ckb:E458, 8ckb:E471, 8ckb:E480, 8ckb:E489, 8ckb:E491, 8ckb:E492, 8ckb:E493, 8ckb:E497, 8ckb:E499, 8ckb:E503, 8ckb:E505, 8ckb:E507, 8ckb:E508, 8ckb:E509, 8ckb:E512, 8ckb:E513, 8ckb:E515, 8ckb:E517, 8ckb:E530, 7qof:D, 7qoh:B, 7qoh:C, 7qoh:D, 7qoh:A, 7qoh:E, 7qoh:F, 7qoi:AB, 7qoi:AC, 7qoi:AD, 7qoi:AE, 7qoi:BB, 7qoi:BD, 7qoi:CB, 7qoi:CD, 7qoi:CE, 7qoi:CF, 7qoi:DB, 7qoi:DE, 7qoi:DF, 7qoi:EB, 7qoi:ED
12 7l1k:A 149 53 0.0761 0.1007 0.2830 6.3
13 6lrb:E 409 28 0.0711 0.0342 0.5000 7.8
14 6zz6:D 1050 62 0.0863 0.0162 0.2742 7.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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