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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MYTFVVRDENSSVYAEVSRLLLATGQWKRLRKDNPRFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKL
IKTSPELSESCTWFPESYVIYPTNTDEREVFLAAYNRRREGREGNVWIAKSGEGILISSEASELLDFIDVHVIQKYLEKP
LLLEPGHRKFDIRSWVLVDHLYNIYLYREGVLRTSSEPYNSANFQDKTCHLTNHCIQKENYGRYEEGNEMFFEEFNQYLM
DALNTTLENSILLQIKHIIRSCLMCIEPAISTKHLHYQSFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELCQGIVD
VAISSVFPLATSIFIKLHH

The query sequence (length=339) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4i4t:F 357 353 1.0000 0.9496 0.9603 0.0 8a0l:F, 7au5:F, 8b7a:F, 8b7c:F, 8bde:F, 5bmv:F, 8c0f:F, 5c8y:F, 5ca0:F, 5ca1:F, 5cb4:F, 7cda:F, 7ce6:F, 7ce8:F, 7cek:F, 7cld:F, 8cld:F, 8clg:F, 7cnm:F, 7cno:G, 7dad:F, 7dae:F, 7daf:F, 7db9:F, 7dbb:F, 7dbc:F, 7dbd:F, 7dp8:F, 7e4p:F, 7e4r:F, 7e4z:F, 6eg5:F, 7emj:F, 7en3:F, 7exc:F, 5ezy:F, 6fii:F, 6fjf:F, 6fjm:F, 6fkj:F, 6fkl:F, 5h74:F, 5h7o:F, 4i55:F, 6i5c:F, 4ihj:F, 5j2u:F, 7jfr:F, 5jh7:F, 8jjb:F, 8jjc:F, 5jvd:F, 6k9v:F, 6knz:F, 5kx5:F, 7l05:F, 5la6:F, 6lsm:F, 6lsn:F, 5lxs:F, 5lxt:F, 5m8d:F, 6n47:F, 5nfz:F, 5ng1:F, 5njh:F, 6nng:F, 4o4h:F, 4o4i:F, 5ov7:F, 8r67:F, 8riv:F, 8riw:F, 5s4l:F, 5s4m:F, 5s4n:F, 5s4o:F, 5s4p:F, 5s4q:F, 5s4r:F, 5s4s:F, 5s4t:F, 5s4u:F, 5s4v:F, 5s4w:F, 5s4x:F, 5s4y:F, 5s4z:F, 5s50:F, 5s51:F, 5s52:F, 5s53:F, 5s55:F, 5s56:F, 5s57:F, 5s58:F, 5s59:F, 5s5a:F, 5s5b:F, 5s5c:F, 5s5d:F, 5s5e:F, 5s5f:F, 5s5g:F, 5s5h:F, 5s5i:F, 5s5j:F, 5s5k:F, 5s5l:F, 5s5m:F, 5s5n:F, 5s5o:F, 5s5p:F, 5s5q:F, 5s5r:F, 5s5s:F, 5s5t:F, 5s5u:F, 5s5v:F, 5s5w:F, 5s5x:F, 5s5y:F, 5s5z:F, 5s60:F, 5s61:F, 5s62:F, 5s63:F, 5s64:F, 5s65:F, 5s66:F, 5s67:F, 5sb3:F, 5sb4:F, 5sb5:F, 5sb7:F, 5sb8:F, 5sba:F, 5sbb:F, 5sbc:F, 5sbd:F, 5sbe:F, 4tuy:F, 4tv8:F, 4tv9:F, 7vmk:F, 8wd0:F, 5xlt:F, 5xlz:F, 5xp3:F, 6y4m:F, 6y4n:F, 6y6d:F, 5yl2:F, 5ylj:F, 5yls:F, 5yz3:F, 7z2n:F, 7z2p:F, 7z7d:F, 8zb8:F, 4zhq:F, 4zi7:F, 4zol:F
2 6br1:F 332 343 0.9676 0.9880 0.9563 0.0 8ahm:F, 8b7b:F, 8bdf:F, 8bdg:F, 6brf:F, 6bry:F, 6bs2:F, 8clb:F, 8clc:F, 8clf:F, 8clh:F, 6d88:F, 8diq:F, 7e4q:F, 7e4y:F, 6gj4:F, 8huh:F, 6hx8:F, 5iyz:F, 5jcb:F, 5lyj:F, 7lz7:F, 5m7e:F, 5m8g:F, 5mf4:F, 4o2a:F, 4o2b:F, 6o5m:F, 6o61:F, 7ogn:F, 5osk:F, 6qqn:F, 6qtn:F, 6s9e:F, 5sb6:F, 6ses:F, 6x1c:F, 6x1e:F, 6x1f:F, 5xaf:F, 5xag:F, 5z4p:F
3 5s54:F 322 347 0.9204 0.9689 0.8991 0.0 8a9t:F, 8a9z:F, 7cbz:F, 5sb9:F
4 8asn:G 346 344 0.8968 0.8786 0.8837 0.0 8asn:H, 8asn:I, 5m7g:F
5 6agk:F 309 339 0.8997 0.9871 0.8997 0.0 5fnv:F, 6gf3:F, 6jcj:F, 5jqg:F, 5xhc:F, 5xi5:F, 5xi7:F, 5yl4:F, 5z4u:F, 5zxh:F
6 8yua:F 310 343 0.8997 0.9839 0.8892 0.0 4i50:F, 5lov:F, 8yu9:F
7 8asn:F 317 342 0.8230 0.8801 0.8158 0.0
8 6f7c:F 281 338 0.8260 0.9964 0.8284 0.0 7zx2:F
9 3tii:B 313 341 0.7611 0.8243 0.7566 0.0 3tig:A, 3tii:A, 3tin:A
10 7lz8:F 256 339 0.7552 1.0000 0.7552 5.15e-178
11 8ytx:F 268 339 0.6873 0.8694 0.6873 1.12e-146 6gze:F, 4o4j:F, 5o7a:F, 7zyw:F
12 8u3z:N 447 271 0.2212 0.1678 0.2768 5.19e-18 6vzq:A, 6vzq:B, 6vzq:C, 6vzq:D, 6vzr:B, 6vzr:A, 6vzr:C, 6vzr:D, 6vzs:A, 6vzs:B, 6vzs:C, 6vzs:D, 6vzt:A, 6vzt:B, 6vzu:A, 6vzu:D, 6vzu:B, 6vzu:C, 6vzv:D, 6vzv:A, 6vzv:B, 6vzv:C, 6vzw:A, 6vzw:B, 6vzw:C, 6vzw:D
13 4ylr:A 331 274 0.1976 0.2024 0.2445 4.63e-11 4yls:A
14 5vlq:B 413 195 0.1534 0.1259 0.2667 1.50e-08
15 5vlq:A 391 171 0.1416 0.1228 0.2807 7.49e-07
16 6y3z:P 348 201 0.1386 0.1351 0.2338 2.30e-04
17 1mcx:A 304 98 0.0737 0.0822 0.2551 0.29
18 2bx9:A 53 48 0.0531 0.3396 0.3750 0.30 2bx9:B, 2bx9:C, 2bx9:D, 2bx9:E, 2bx9:F, 2bx9:G, 2bx9:H, 2bx9:I, 2bx9:J, 2bx9:K, 2bx9:L, 2ko8:A, 2ko8:B, 2ko8:C, 2zp8:E, 2zp8:F, 2zp8:G, 2zp8:H, 2zp8:I, 2zp8:J, 2zp9:E
19 2zp9:C 46 24 0.0295 0.2174 0.4167 2.4 2zp9:M, 2zp9:O, 2zp9:D, 2zp9:I, 2zp9:J
20 3out:B 264 51 0.0442 0.0568 0.2941 4.6 3out:A, 3out:C
21 7jjn:A 514 51 0.0413 0.0272 0.2745 5.1 7jjn:B
22 5w5r:A 415 85 0.0590 0.0482 0.2353 7.3 3brk:X, 5w5r:P, 5w5r:D, 5w5r:M, 5w5r:E, 5w5r:H, 5w5r:G, 5w5r:C, 5w5r:I, 5w5r:J, 5w5r:B, 5w5r:K, 5w5r:Q, 5w5r:F, 5w5r:T, 5w5r:U, 5w5t:A, 5w5t:B, 5w5t:C, 5w5t:D, 5w5t:E, 5w5t:F, 5w5t:G, 5w5t:H, 5w5t:I, 5w5t:J, 5w5t:K, 5w5t:L, 5w5t:M, 5w5t:N, 5w5t:O, 5w5t:P, 5w5t:Q, 5w5t:R, 5w5t:Z, 5w5t:T
23 8evw:B 326 78 0.0649 0.0675 0.2821 7.9 8evw:A, 8evx:A
24 8evx:B 305 78 0.0649 0.0721 0.2821 8.2
25 6qbt:A 148 40 0.0383 0.0878 0.3250 8.9 6qbv:B, 6qbv:C, 6qbv:D, 6qbw:A
26 8ftm:B 731 63 0.0501 0.0233 0.2698 9.3 8ftm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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