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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MYTFVVRDENSSVYAEVSRLLLATGQWKRLRKDNPRFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKL
IKTSPELSESCTWFPESYVITDEREVFLAAYNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQGQVHVIQK
YLEKPLLLEPGHRKFDIRSWVLVDHLYNIYLYREGVLREEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCI
EPAISTKHLHYQSFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELCQGIVDVAISSVFPLATSIFIKLHH

The query sequence (length=313) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4i4t:F 357 353 1.0000 0.8768 0.8867 0.0 8a0l:F, 7au5:F, 8b7a:F, 8b7c:F, 8bde:F, 5bmv:F, 8c0f:F, 5c8y:F, 5ca0:F, 5ca1:F, 5cb4:F, 7cda:F, 7ce6:F, 7ce8:F, 7cek:F, 7cld:F, 8cld:F, 8clg:F, 7cnm:F, 7cno:G, 7dad:F, 7dae:F, 7daf:F, 7db9:F, 7dbb:F, 7dbc:F, 7dbd:F, 7dp8:F, 7e4p:F, 7e4r:F, 7e4z:F, 6eg5:F, 7emj:F, 7en3:F, 7exc:F, 5ezy:F, 6fii:F, 6fjf:F, 6fjm:F, 6fkj:F, 6fkl:F, 5h74:F, 5h7o:F, 4i55:F, 6i5c:F, 4ihj:F, 5j2u:F, 7jfr:F, 5jh7:F, 8jjb:F, 8jjc:F, 5jvd:F, 6k9v:F, 6knz:F, 5kx5:F, 7l05:F, 5la6:F, 6lsm:F, 6lsn:F, 5lxs:F, 5lxt:F, 5m8d:F, 6n47:F, 5nfz:F, 5ng1:F, 5njh:F, 6nng:F, 4o4h:F, 4o4i:F, 5ov7:F, 8r67:F, 8riv:F, 8riw:F, 5s4l:F, 5s4m:F, 5s4n:F, 5s4o:F, 5s4p:F, 5s4q:F, 5s4r:F, 5s4s:F, 5s4t:F, 5s4u:F, 5s4v:F, 5s4w:F, 5s4x:F, 5s4y:F, 5s4z:F, 5s50:F, 5s51:F, 5s52:F, 5s53:F, 5s55:F, 5s56:F, 5s57:F, 5s58:F, 5s59:F, 5s5a:F, 5s5b:F, 5s5c:F, 5s5d:F, 5s5e:F, 5s5f:F, 5s5g:F, 5s5h:F, 5s5i:F, 5s5j:F, 5s5k:F, 5s5l:F, 5s5m:F, 5s5n:F, 5s5o:F, 5s5p:F, 5s5q:F, 5s5r:F, 5s5s:F, 5s5t:F, 5s5u:F, 5s5v:F, 5s5w:F, 5s5x:F, 5s5y:F, 5s5z:F, 5s60:F, 5s61:F, 5s62:F, 5s63:F, 5s64:F, 5s65:F, 5s66:F, 5s67:F, 5sb3:F, 5sb4:F, 5sb5:F, 5sb7:F, 5sb8:F, 5sba:F, 5sbb:F, 5sbc:F, 5sbd:F, 5sbe:F, 4tuy:F, 4tv8:F, 4tv9:F, 7vmk:F, 8wd0:F, 5xlt:F, 5xlz:F, 5xp3:F, 6y4m:F, 6y4n:F, 6y6d:F, 5yl2:F, 5ylj:F, 5yls:F, 5yz3:F, 7z2n:F, 7z2p:F, 7z7d:F, 8zb8:F, 4zhq:F, 4zi7:F, 4zol:F
2 5s54:F 322 324 0.9872 0.9596 0.9537 0.0 8a9t:F, 8a9z:F, 7cbz:F, 5sb9:F
3 6br1:F 332 343 0.9553 0.9006 0.8717 0.0 8ahm:F, 8b7b:F, 8bdf:F, 8bdg:F, 6brf:F, 6bry:F, 6bs2:F, 8clb:F, 8clc:F, 8clf:F, 8clh:F, 6d88:F, 8diq:F, 7e4q:F, 7e4y:F, 6gj4:F, 8huh:F, 6hx8:F, 5iyz:F, 5jcb:F, 5lyj:F, 7lz7:F, 5m7e:F, 5m8g:F, 5mf4:F, 4o2a:F, 4o2b:F, 6o5m:F, 6o61:F, 7ogn:F, 5osk:F, 6qqn:F, 6qtn:F, 6s9e:F, 5sb6:F, 6ses:F, 6x1c:F, 6x1e:F, 6x1f:F, 5xaf:F, 5xag:F, 5z4p:F
4 8yua:F 310 330 0.9265 0.9355 0.8788 0.0 4i50:F, 5lov:F, 8yu9:F
5 8asn:G 346 347 0.8914 0.8064 0.8040 0.0 8asn:H, 8asn:I, 5m7g:F
6 8asn:F 317 325 0.8626 0.8517 0.8308 0.0
7 6f7c:F 281 317 0.8786 0.9786 0.8675 0.0 7zx2:F
8 3tii:B 313 314 0.8147 0.8147 0.8121 0.0 3tig:A, 3tii:A, 3tin:A
9 6agk:F 309 341 0.8658 0.8770 0.7947 0.0 5fnv:F, 6gf3:F, 6jcj:F, 5jqg:F, 5xhc:F, 5xi5:F, 5xi7:F, 5yl4:F, 5z4u:F, 5zxh:F
10 7lz8:F 256 313 0.7891 0.9648 0.7891 1.98e-174
11 8ytx:F 268 313 0.7188 0.8396 0.7188 1.88e-145 6gze:F, 4o4j:F, 5o7a:F, 7zyw:F
12 8u3z:N 447 271 0.2045 0.1432 0.2362 7.60e-13 6vzq:A, 6vzq:B, 6vzq:C, 6vzq:D, 6vzr:B, 6vzr:A, 6vzr:C, 6vzr:D, 6vzs:A, 6vzs:B, 6vzs:C, 6vzs:D, 6vzt:A, 6vzt:B, 6vzu:A, 6vzu:D, 6vzu:B, 6vzu:C, 6vzv:D, 6vzv:A, 6vzv:B, 6vzv:C, 6vzw:A, 6vzw:B, 6vzw:C, 6vzw:D
13 4ylr:A 331 262 0.2173 0.2054 0.2595 9.78e-12 4yls:A
14 5vlq:A 391 144 0.1374 0.1100 0.2986 2.48e-08
15 5vlq:B 413 153 0.1342 0.1017 0.2745 1.93e-07
16 6y3z:P 348 301 0.2524 0.2270 0.2625 5.39e-07
17 1mcx:A 304 97 0.0799 0.0822 0.2577 0.19
18 6shm:A 339 60 0.0639 0.0590 0.3333 0.90 6y8f:A
19 3qis:A 293 46 0.0479 0.0512 0.3261 1.0
20 8ftm:B 731 69 0.0575 0.0246 0.2609 4.6 8ftm:A
21 8evw:B 326 78 0.0703 0.0675 0.2821 4.9 8evw:A, 8evx:A
22 8evx:B 305 78 0.0703 0.0721 0.2821 5.2
23 3out:B 264 51 0.0479 0.0568 0.2941 5.3 3out:A, 3out:C
24 4w7v:A 313 62 0.0639 0.0639 0.3226 6.3 4w7w:A
25 2ecj:A 58 44 0.0447 0.2414 0.3182 6.4
26 3ku1:A 214 53 0.0607 0.0888 0.3585 6.4 3ku1:C, 3ku1:G, 3ku1:H
27 5jrk:A 695 68 0.0607 0.0273 0.2794 7.2 5jrk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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