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BioLiP
>protein
MYRVFVFDLDGTLLNDNLEISEKDRRNIEKLSRKCYVVFASGRMLVSTLNVEKKYFKRTFPTIAYNGAIVYLPEEGVILN
EKIPPEVAKDIIEYIKPLNVHWQAYIDDVLYSEKDNEEIKSYARHSNVDYRVEPNLSELVSKMGTTKLLLIDTPERLDEL
KEILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAIEKVKE
ASDIVTLTNNDSGVSYVLERISTDCLD

The query sequence (length=267) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1nf2:A 267 267 1.0000 1.0000 1.0000 0.0 1nf2:B, 1nf2:C
2 4dwo:A 268 272 0.3109 0.3097 0.3051 4.95e-29 3niw:A
3 1rkq:A 271 276 0.3109 0.3063 0.3007 2.34e-27 1rkq:B
4 1nrw:A 285 286 0.2697 0.2526 0.2517 6.21e-22
5 4zev:A 290 266 0.2547 0.2345 0.2556 2.62e-17 4qjb:A, 4qjb:B, 4zev:B, 4zew:A, 4zew:B, 4zex:A, 4zex:B
6 3pgv:A 259 243 0.2360 0.2432 0.2593 6.61e-15 3pgv:B, 3pgv:C, 3pgv:D
7 2b30:A 284 274 0.2434 0.2289 0.2372 2.36e-14 2b30:B, 2b30:C, 2b30:D
8 3r4c:A 268 268 0.2360 0.2351 0.2351 4.38e-12
9 2rar:A 261 268 0.2547 0.2605 0.2537 2.26e-09 2rav:A, 2rb5:A, 2rbk:A, 1ymq:A
10 3l7y:A 266 74 0.1049 0.1053 0.3784 2.91e-09
11 1rlm:A 269 267 0.2472 0.2454 0.2472 4.72e-07 1rlm:B, 1rlm:C, 1rlm:D, 1rlo:A, 1rlo:B, 1rlo:C, 1rlo:D, 1rlt:A, 1rlt:B, 1rlt:C, 1rlt:D
12 2b1q:A 244 239 0.2022 0.2213 0.2259 1.58e-06 2b1r:A, 2d2v:A, 1s2o:A, 1tj3:A, 1tj4:A, 1tj5:A, 1u2s:A, 1u2t:A
13 3gyg:D 250 80 0.0712 0.0760 0.2375 3.48e-05
14 3gyg:A 285 80 0.0712 0.0667 0.2375 4.02e-05 3gyg:C
15 3gyg:B 230 79 0.0712 0.0826 0.2405 5.11e-05
16 1kyt:A 225 146 0.1199 0.1422 0.2192 0.002 1kyt:B, 1l6r:A, 1l6r:B
17 3n1u:A 182 56 0.0712 0.1044 0.3393 0.003
18 3m1y:C 208 52 0.0749 0.0962 0.3846 0.004 3m1y:A, 3m1y:B, 3m1y:D
19 4um7:A 175 80 0.0899 0.1371 0.3000 0.014 4um5:A, 4um5:B, 4um5:C, 4um5:D, 4um7:B, 4um7:C, 4um7:D, 4ume:A, 4umf:A, 4umf:B, 4umf:C, 4umf:D
20 8a1z:A 396 53 0.0712 0.0480 0.3585 0.021 8a21:A, 5is2:A, 5it0:A, 5it4:A, 5jjb:A, 5jlp:A, 5jlr:A, 5jma:A, 3p96:A, 5t41:A
21 7eip:A 966 83 0.1049 0.0290 0.3373 0.077 7eiq:A, 7eir:A, 7eis:A, 7yke:A
22 5ue7:A 251 40 0.0637 0.0677 0.4250 0.085 5ue7:B
23 4hgn:A 165 60 0.0524 0.0848 0.2333 0.14 4hgn:B, 4hgn:C, 4hgn:D
24 4b10:A 385 113 0.1086 0.0753 0.2566 0.19 4a95:A, 4a95:B, 4a95:C, 4b10:B, 4b10:C, 4b11:A, 4b11:B, 4b11:C, 4b12:A, 4b12:B, 4b12:C, 4b13:A, 4b13:B, 4b13:C, 4b14:A, 4b14:B, 4b14:C, 6b1l:A, 4bbh:A, 4bbh:B, 4bbh:C, 4c68:A, 4c68:B, 4c68:C, 4cae:A, 4cae:B, 4cae:C, 4caf:A, 4caf:B, 4caf:C, 8fbq:A, 5g1z:A, 5g1z:B, 5g1z:C, 5g22:A, 5g22:B, 5g22:C, 6may:A, 6may:B, 6may:C, 6maz:A, 6maz:B, 6maz:C, 6mb0:A, 6mb0:B, 6mb0:C, 6mb1:A, 6mb1:B, 6mb1:C, 6nxg:A, 6nxg:B, 6nxg:C, 5o48:A, 5o48:B, 5o48:C, 5o4v:A, 5o4v:B, 5o4v:C, 6tw5:AAA, 6tw5:BBB, 6tw5:CCC, 6tw6:AAA, 6tw6:BBB, 6tw6:CCC, 4ufv:A, 4ufv:B, 4ufv:C, 4ufw:A, 4ufw:B, 4ufw:C, 4ufx:A, 4ufx:B, 4ufx:C, 5v0w:A, 5v0w:B, 5v0w:C, 5v0x:A, 5v0x:B, 5v0x:C, 8vka:A, 8vka:B, 8vka:C, 8vkb:A, 8vkb:B, 8vkb:C, 2ync:A, 2ync:B, 2ync:C, 2ynd:A, 2ynd:B, 2ynd:C, 2yne:A, 2yne:B, 2yne:C
25 1f5s:A 210 39 0.0637 0.0810 0.4359 0.34 1f5s:B, 1j97:A, 1j97:B, 1l7m:A, 1l7m:B, 1l7n:A, 1l7n:B, 1l7o:A, 1l7o:B, 1l7p:A, 1l7p:B
26 8q4s:A 295 35 0.0487 0.0441 0.3714 0.40 7qpl:A
27 8ova:AX 208 43 0.0524 0.0673 0.3256 0.54 7ase:M, 5opt:m, 8ove:AX, 4v8m:AX
28 7bkb:G 568 43 0.0524 0.0246 0.3256 0.79 7bkb:g, 7bkc:G, 7bkc:g
29 7nnl:B 682 44 0.0524 0.0205 0.3182 0.83 2a00:A, 2a29:A, 7bgy:B, 7bh1:B, 7bh2:B, 6hra:B, 6hrb:B, 7lc3:B, 7lc6:B, 5mrw:B, 5mrw:F, 5mrw:J, 7nnp:B, 7zrd:B, 7zre:B, 7zrg:B, 7zrh:B, 7zri:B, 7zrj:B, 7zrk:B, 7zrl:B, 7zrm:B
30 7x07:A 633 53 0.0524 0.0221 0.2642 2.0 7shn:A, 7shn:B, 7vzb:A, 7vzb:B, 7x0t:A, 7x0t:B, 7x1w:A, 7x1w:B, 7xec:A, 7yrq:A, 7yrq:B
31 7rr9:A 560 53 0.0524 0.0250 0.2642 2.2 7rr9:B, 7vx8:B, 7vx8:A
32 6st5:A 913 54 0.0562 0.0164 0.2778 2.3
33 7x0z:B 580 53 0.0524 0.0241 0.2642 2.4 7shm:A, 7shm:B, 7x0z:A
34 4rdl:A 297 45 0.0562 0.0505 0.3333 2.7 4rdk:A, 4rdk:B, 4rdl:B
35 7vh6:A 768 56 0.0599 0.0208 0.2857 3.7 7vh6:B, 7vh6:C, 7vh6:D, 7vh6:E, 7vh6:F
36 3cf5:4 37 32 0.0487 0.3514 0.4062 3.9 3dll:4, 4io9:4, 4ioa:4, 4ioc:4, 1nwx:4, 1nwy:4, 3pio:4, 3pip:4, 4v4g:B6, 4v4g:D6, 4v4g:F6, 4v4g:H6, 4v4g:J6, 4v4p:A9, 4v4r:B9, 4v4s:B9, 4v4t:B9, 2zjp:4, 2zjq:4, 2zjr:4
37 3zx4:B 254 71 0.0899 0.0945 0.3380 4.4 3zu6:B, 3zup:A, 3zup:B, 3zw7:A, 3zw7:B, 3zwd:A, 3zwd:B, 3zwk:A, 3zwk:B, 3zx4:A, 3zx5:A, 3zx5:B
38 3nrj:I 177 49 0.0524 0.0791 0.2857 5.2 3nrj:A, 3nrj:B, 3nrj:C, 3nrj:D, 3nrj:E, 3nrj:F, 3nrj:G, 3nrj:H, 3nrj:J, 3nrj:K, 3nrj:L
39 1zjc:A 413 75 0.0787 0.0508 0.2800 6.3
40 7cww:A 350 128 0.1086 0.0829 0.2266 6.3
41 8rte:A 350 77 0.0637 0.0486 0.2208 6.5 8rte:B
42 5ksd:A 833 64 0.0599 0.0192 0.2500 7.1 5ksd:B
43 6hyj:B 223 29 0.0412 0.0493 0.3793 8.4 6hyj:A, 6hyy:A, 6hyy:B, 1l8l:A, 1l8l:B, 1l8o:A, 1l8o:B, 1nnl:A, 1nnl:B, 6q6j:A, 6q6j:B
44 6c80:B 486 30 0.0449 0.0247 0.4000 8.6 6c80:A
45 2yj4:B 252 54 0.0637 0.0675 0.3148 8.7 2iye:A, 2iye:C, 2yj3:A, 2yj4:A, 2yj5:A, 2yj5:B, 2yj6:A, 2yj6:B
46 3o8o:B 763 87 0.0824 0.0288 0.2529 8.7 3o8o:D, 3o8o:F, 3o8o:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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